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Report for CCDS44602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44602.1 Public Homo sapiens 11 SELENOH 24 110 108 CCDS HistoryNCBI Gene:280636Re-query CCDS DB by CCDS ID:44602.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 44602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388857.8 ENSP00000373509.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388857.8Link to Ensembl Protein Viewer:ENSP00000373509.4Re-query CCDS DB by Nucleotide ID:ENST00000388857Re-query CCDS DB by Protein ID:ENSP00000373509
Original member Current member EBI ENST00000534355.6 ENSP00000434511.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000534355.6Link to Ensembl Protein Viewer:ENSP00000434511.1Re-query CCDS DB by Nucleotide ID:ENST00000534355Re-query CCDS DB by Protein ID:ENSP00000434511
Original member Current member NCBI NM_001321335.2 NP_001308264.1 Accepted alive Link to Nucleotide Sequence:NM_001321335.2Link to Protein Sequence:NP_001308264.1Re-query CCDS DB by Nucleotide ID:NM_001321335Re-query CCDS DB by Protein ID:NP_001308264Link to BLAST:NP_001308264.1
Original member Current member NCBI NM_170746.4 NP_734467.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170746.4Link to Protein Sequence:NP_734467.1Re-query CCDS DB by Nucleotide ID:NM_170746Re-query CCDS DB by Protein ID:NP_734467Link to BLAST:NP_734467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308264.1 122 Q8IZQ5 122 100% 0 0
NP_734467.1 122 Q8IZQ5 122 100% 0 0

Chromosomal Locations for CCDS 44602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57741596 57741717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57741809 57741954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57742117 57742217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 44

Nucleotide Sequence (369 nt):
ATGGCTCCCCGCGGGAGGAAGCGTAAGGCTGAGGCCGCGGTGGTCGCCGTAGCCGAGAAGCGAGAGAAGC
TGGCGAACGGCGGGGAGGGAATGGAGGAGGCGACCGTTGTTATCGAGCATTGCACTAGCTGACGCGTCTA
TGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCAGAGCTTCCAGTAAAGGTGAAC
CCGACGAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCGGACGGCAGCAGTGCGGAGCTCT
GGACTGGGATTAAGAAGGGGCCCCCACGCAAACTCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTT
GAAGAAGTACCTGTCGTAG

Translation (122 aa):
MAPRGRKRKAEAAVVAVAEKREKLANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVN
PTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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