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Report for CCDS4247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4247.1 Public Homo sapiens 5 PCDHB5 24 110 108 CCDS HistoryNCBI Gene:26167Re-query CCDS DB by CCDS ID:4247.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231134.8 ENSP00000231134.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231134.8Link to Ensembl Protein Viewer:ENSP00000231134.5Re-query CCDS DB by Nucleotide ID:ENST00000231134Re-query CCDS DB by Protein ID:ENSP00000231134
Original member Current member NCBI NM_015669.5 NP_056484.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015669.5Link to Protein Sequence:NP_056484.2Re-query CCDS DB by Nucleotide ID:NM_015669Re-query CCDS DB by Protein ID:NP_056484Link to BLAST:NP_056484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056484.2 795 Q9Y5E4 795 100% 0 0

Chromosomal Locations for CCDS 4247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141135435 141137822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGAGACTGCGCTAGCAAAAACGCCACAGAAAAGGCAAGTTATGTTTCTTGCTATATTGTTGCTTTTGT
GGGAGGCTGGCTCTGAGGCAGTTAGGTATTCCATACCAGAAGAAACAGAAAGTGGCTATTCTGTGGCCAA
CCTGGCAAAAGACCTGGGTCTTGGGGTGGGGGAACTGGCCACTCGGGGCGCGCGAATGCATTACAAAGGA
AACAAAGAGCTCTTGCAGCTTGATATAAAGACCGGCAATTTGCTTCTATATGAAAAACTAGACCGGGAGG
TGATGTGCGGGGCGACAGAACCCTGTATATTGCATTTCCAGCTCTTACTAGAAAATCCAGTGCAGTTTTT
TCAAACTGATCTGCAGCTCACAGATATAAATGACCATGCCCCAGAGTTCCCAGAGAAGGAAATGCTCCTA
AAAATCCCAGAGAGCACCCAGCCAGGGACTGTGTTTCCCTTAAAAATAGCCCAGGACTTTGACATAGGTA
GCAACACTGTTCAGAACTACACAATCAGCCCAAATTCACACTTTCATGTTGCTACGCATAATCGCGGAGA
TGGCAGAAAATACCCAGAGCTGGTGCTGGACAAAGCGCTGGACCGGGAGGAGCGGCCTGAGCTCAGCTTA
ACACTCACTGCACTGGACGGTGGGGCTCCGCCCAGGTCCGGGACCACCACAATTCGCATTGTCGTCTTGG
ATAATAATGACAACGCCCCCGAATTTTTACAATCATTCTATGAGGTACAGGTGCCCGAGAACAGCCCCCT
TAACTCCTTAGTTGTCGTTGTCTCCGCTCGAGATTTAGATGCAGGAGCATATGGGAGTGTAGCCTATGCT
CTATTCCAAGGCGATGAAGTTACTCAACCATTTGTAATAGACGAGAAAACAGCAGAAATTCGCCTGAAAA
GGGCATTGGATTTCGAGGCAACTCCATATTATAACGTGGAAATTGTAGCCACAGATGGTGGGGGCCTTTC
AGGAAAATGCACTGTGGCTATAGAAGTGGTGGATGTGAATGACAACGCCCCTGAACTCACCATGTCTACG
CTCTCCAGCCCTACCCCAGAAAATGCCCCGGAAACTGTAGTTGCCGTTTTCAGTGTTTCTGATCCAGACT
CCGGGGACAACGGTAGGATGATTTGCTCCATCCAGAATGATCTCCCCTTTCTTTTGAAGCCCACATTAAA
AAACTTTTACACCCTAGTGACACAGAGAACACTGGACAGAGAGAGCCAAGCCGAGTACAACATCACCATC
ACTGTCACCGACATGGGGACACCCAGGCTGAAAACCGAGCACAACATAACGGTCCTGGTCTCCGACGTCA
ATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGAGAGAACAACAGCCCCGCCCT
GCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCAGGCACCAACGCCCAGGTCACCTACTCGCTGCTG
CCGCCCCAGAACCCACACCTGCGCCTCGCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGTTTG
CCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGAGCCACAGACCGCGGCTC
CCCGGCGCTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTG
CTGTATCCGCTGCAGAACGGCTCGGCGCCTTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTACC
TGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCTCAA
GGCCACGGAGCCCGGGCTGTTCAGCATGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTGAGC
GAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCA
CCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTGCCGGAGGCGGCCCC
GGCCCAGGCCCAGGCCGACTCGCTCACTGTCTACCTGGTGGTGGCATTGGCCTCGGTGTCGTCGCTCTTC
CTCTTTTCGGTGCTCCTGTTCGTGGCAGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTCGGTCGCT
GCTCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGCGGCACCGGGACCCTATCCCAGAG
CTACCACTACGAGGTGTGTTTGACCGGAGACTCAGGGGCCGGCGAGTTCAAGTTCCTGAAGCCGATTATT
CCTAACCTTTTGCCCCAGGGCGCTGGTGAAGAAATAGGGAAAACTGCTGCCTTCCGGAATAGCTTTGGAT
TAAATTAG

Translation (795 aa):
METALAKTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELATRGARMHYKG
NKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTDLQLTDINDHAPEFPEKEMLL
KIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHVATHNRGDGRKYPELVLDKALDREERPELSL
TLTALDGGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYA
LFQGDEVTQPFVIDEKTAEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMST
LSSPTPENAPETVVAVFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNITI
TVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL
PPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFV
LYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFSMWAHNGEVRTARLLS
ERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLF
LFSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKPII
PNLLPQGAGEEIGKTAAFRNSFGLN


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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