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Report for CCDS21608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21608.1 Public Mus musculus 7 Or52d1 23 108 98 CCDS HistoryNCBI Gene:259058Re-query CCDS DB by CCDS ID:21608.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098182.3 ENSMUSP00000095784.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098182.3Link to Ensembl Protein Viewer:ENSMUSP00000095784.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098182Re-query CCDS DB by Protein ID:ENSMUSP00000095784
Original member Current member EBI ENSMUST00000214099.1 ENSMUSP00000149102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214099.1Link to Ensembl Protein Viewer:ENSMUSP00000149102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214099Re-query CCDS DB by Protein ID:ENSMUSP00000149102
Original member Current member NCBI NM_147056.1 NP_667267.1 Accepted alive Link to Nucleotide Sequence:NM_147056.1Link to Protein Sequence:NP_667267.1Re-query CCDS DB by Nucleotide ID:NM_147056Re-query CCDS DB by Protein ID:NP_667267Link to BLAST:NP_667267.1

Chromosomal Locations for CCDS 21608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104106281 104107219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGCGAAAGTCTCCCAGTCACTCTCTTCCTAACTGGGATCCCAGGGCTGGAGTTCGCCCACCTCTGGA
TTGCCATCCCCTTCTGTGTCATGTATGTGGTTGCTCTGCTTGGGAATGCTGCCCTCATCCTTATCATTGG
GACAGAGAGTGTGCTTCACACACCCATGTACCTCTTCCTCTGCCTTCTCTCACTCACTGACTTGGCTCTC
AGCTCCACCACTGTACCTAAAATGTTGGCCATTCTATGGCTCCATTCTAATGAGATTTCCTTTGGTGGAT
GCCTCGCCCAGATGTTTTGTGTCCACTCCATCTATGCTCTTGAGTCCTCGGTTCTCCTTGCCATGGCCTT
TGATCGATATGTAGCTATCTGCAACCCACTGAGATATACAACCATCCTCAACCATACTGTCATAGCCCAA
ATTATCTTTGCTGGGATAGTCCGTAGTGTGGCTATTGTCTCCCCTTTCATCTTTTTGCTGAGGCGACTGC
CCTACTGTGGTCACCGTGTCATGACTCACACATACTGTGAGCATATGGGCATTGCTAGGCTTGCCTGTGC
CAATATTACTGTTAATATTGTCTATGGGTTGACTGTAGCTTTGCTGGCCATGGGCCTGGATTCCATCCTC
ATTGCCATCTCCTATGGCTTCATCCTCCGGGCTGTCTTCCGTCTTCCATCCCGTGATGCTCAACACAAGG
CTCTGAGTACCTGTGGATCTCACCTTGGTGTCATTCTGGTTTTCTATATACCTGCTTTCTTCTCCTTCCT
CACCCATCGCTTTGGTCACAATCGAGTTCCCAAGCATGTGCATATCTTCCTGGCTAACCTCTATGTGCTG
GTGCCTCCCGTGCTCAATCCCATCATCTACGGTGCAAGAACCAAGGAGATTCGGAGTCGGCTTCTAAAAC
TGCTTCACTTGGGGAAGGACTTAGTATGA

Translation (312 aa):
MSESLPVTLFLTGIPGLEFAHLWIAIPFCVMYVVALLGNAALILIIGTESVLHTPMYLFLCLLSLTDLAL
SSTTVPKMLAILWLHSNEISFGGCLAQMFCVHSIYALESSVLLAMAFDRYVAICNPLRYTTILNHTVIAQ
IIFAGIVRSVAIVSPFIFLLRRLPYCGHRVMTHTYCEHMGIARLACANITVNIVYGLTVALLAMGLDSIL
IAISYGFILRAVFRLPSRDAQHKALSTCGSHLGVILVFYIPAFFSFLTHRFGHNRVPKHVHIFLANLYVL
VPPVLNPIIYGARTKEIRSRLLKLLHLGKDLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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