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Report for CCDS66138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66138.1 Public Homo sapiens 11 TSGA10IP 24 110 108 CCDS HistoryNCBI Gene:254187Re-query CCDS DB by CCDS ID:66138.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000532620.6 ENSP00000484252.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000532620.6Link to Ensembl Protein Viewer:ENSP00000484252.1Re-query CCDS DB by Nucleotide ID:ENST00000532620Re-query CCDS DB by Protein ID:ENSP00000484252
Original member Current member NCBI NM_152762.3 NP_689975.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152762.3Link to Protein Sequence:NP_689975.2Re-query CCDS DB by Nucleotide ID:NM_152762Re-query CCDS DB by Protein ID:NP_689975Link to BLAST:NP_689975.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689975.2 556 Q3SY00-1 556 100% 0 0

Chromosomal Locations for CCDS 66138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65945676 65945822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65946880 65947016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65947110 65947828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65948001 65948148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65953567 65953737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65958883 65958982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65959190 65959314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65959817 65959940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGGGCAGGACACCGATATGCTAAATACCTACCAACAGTTGGTTAGGACCCCGTCGGTGCGACCAGGGC
AGGACGTGCGGCTCCAGGCTCCAGGAACCAGAACGGGGCTGCTCAAGCTGCTGTCGACCGTCTCTCAGGA
CAAGCAGGGCTGCCTGGGGAGTGGTGATGGTGTGCCAAATCAAGACCTGCAGCAGAGGTCTCAGAGCTCA
AGGCAGACAGCAAAGAAGGACCGCAAGCCCAGGGGCCAGAGCAAGAAAGGACAGGGCTCTGAAGAGTCTG
AAGATCACTTCCCGCTTCTTCCTCGGAAACCCTCCTTCCCCTTCCAGTGGGCCTGGGAGAGCATCGCCAC
AGATGTCCGGGCTGTGCTTCAGCCAAGCTCCCCAACCCCTGGCCACCAAGCCCTGCCCATGCCCTCCTCG
TTCTCCCAGCGTCAGTCCAGGCGCAAGTCCACGGCCAACCTCCCAGAGGCCCATGGCTGCTGCTGGAAGA
CAGAGGCGCAAAACCTGAAGGCGAGACAGCAGCTGGGAGCCTGGGGCGGTGTCTCCATCCCTACTGGCAA
AGGGGAGCTAGGATCAGAGCCCCCCAGTGGTCTCCAGCTGCCTGGGAGGAGGCCAGGATCAGGATCGGCG
TCCGACAAGCAGGTCCAGCTGCAAAGCCTGGGTGCTGAGGAGGCCGAGAGGGGTCTGAGTTCTGGGGTGC
TGCCCCAGCGCCCCAGGAGGGGGTCGATCTCAGAGGAGGAGCAATTTTCAGAGGCCACAGAGGAGGCTGA
GGAGGGAGAGCACAGGACTCCCTGCAGAAGGAGGGCTGGTTGTCAGAGAAAGGGGCAGATTTCTGGAGAG
GAAGCCTCCGATGAGGGAGAAGTGCAGGGCCAGAGCCAGGGGAGCAGCCCCAGCTTCAACAACCTCCGAA
GGCGACAATGGAGGAAGACAAGGGCCAAGGAGCTGCAGGGGCCATGGGACCTGGAGAAGCTGCACAGGCA
GCTACAGAGAGACCTGGACTGTGGCCCCCAAAAGCTGCCCTGGAAGACTTTGAGGGCTGCCTTCCAGGCC
TCCAAGCGGAATGGAAAGGCCTATGCCTCGGGATACGATGAAACTTTCGTGTCTGCCAACCTCCCTAATC
GCACCTTCCACAAACGACAGGAAGCCACCAGGAGCCTGCTGCAGGCCTGGGAGCGGCAGCGGCAGGAGGA
GCGGCAGCAGGCCGAGCTGCGGCGGGCCCGGACACAGCATGTACAGCGGCAGGTGGCCCACTGCCTGGCA
GCCTACGCACCCAGAGGGAGCCGGGGCCCTGGGGCGGCCCAGCGCAAGCTGGAGGAGCTGAGGCGCCAGG
AGCGACAGCGCTTTGCTGAGTACCAGGCGGAGCTGCAAGGCATCCAGCACAGGGTGCAGGCCCGGCCCTT
CCTGTTCCAGCAGGCTATGCAGGCCAATGCCCGGCTCACCGTCACTCGGCGCTTCTCCCAGGTGCTGTCA
GCACTGGGGCTGGATGAGGAGCAGCTGCTGTCTGAGGCAGGAAAGGTGGACAGAGAGGGCACCCCCAGGA
AACCCAGGAGCCACAGGTCAATGGGGGTGAGAATGGAGCACTCTCCTCAGAGGCCCCCAAGGACAGAACC
CACCGGCAGCCAGCCTGACAGGCACTACAACCCCAGCCTGGACCCGGAGTGCAGTCCCTGA

Translation (556 aa):
MGQDTDMLNTYQQLVRTPSVRPGQDVRLQAPGTRTGLLKLLSTVSQDKQGCLGSGDGVPNQDLQQRSQSS
RQTAKKDRKPRGQSKKGQGSEESEDHFPLLPRKPSFPFQWAWESIATDVRAVLQPSSPTPGHQALPMPSS
FSQRQSRRKSTANLPEAHGCCWKTEAQNLKARQQLGAWGGVSIPTGKGELGSEPPSGLQLPGRRPGSGSA
SDKQVQLQSLGAEEAERGLSSGVLPQRPRRGSISEEEQFSEATEEAEEGEHRTPCRRRAGCQRKGQISGE
EASDEGEVQGQSQGSSPSFNNLRRRQWRKTRAKELQGPWDLEKLHRQLQRDLDCGPQKLPWKTLRAAFQA
SKRNGKAYASGYDETFVSANLPNRTFHKRQEATRSLLQAWERQRQEERQQAELRRARTQHVQRQVAHCLA
AYAPRGSRGPGAAQRKLEELRRQERQRFAEYQAELQGIQHRVQARPFLFQQAMQANARLTVTRRFSQVLS
ALGLDEEQLLSEAGKVDREGTPRKPRSHRSMGVRMEHSPQRPPRTEPTGSQPDRHYNPSLDPECSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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