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Report for CCDS27434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27434.1 Public Mus musculus 15 Grhl2 23 108 98 CCDS HistoryNCBI Gene:252973Re-query CCDS DB by CCDS ID:27434.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022895.14 ENSMUSP00000022895.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022895.14Link to Ensembl Protein Viewer:ENSMUSP00000022895.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022895Re-query CCDS DB by Protein ID:ENSMUSP00000022895
Original member Current member NCBI NM_026496.4 NP_080772.2 Accepted alive Link to Nucleotide Sequence:NM_026496.4Link to Protein Sequence:NP_080772.2Re-query CCDS DB by Nucleotide ID:NM_026496Re-query CCDS DB by Protein ID:NP_080772Link to BLAST:NP_080772.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080772.2 625 Q8K5C0 625 100% 0 0

Chromosomal Locations for CCDS 27434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 37233387 37233406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37270590 37270785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37274643 37274710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37279334 37279727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37287242 37287297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37288188 37288344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37291561 37291672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37309665 37309759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37328230 37328388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37335702 37335789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37336206 37336345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37337773 37337804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37344653 37344747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37347769 37347854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37358370 37358434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37360737 37360851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGTCACAAGAGTCGGACAATAATAAAAGACTAGTGGCCTTAGTGCCCATGCCCAGTGACCCTCCCTTCA
ACACCCGAAGAGCCTACACAAGTGAGGATGAGGCCTGGAAGTCATATCTGGAGAACCCCCTGACTGCGGC
CACCAAGGCGATGATGAGCATCAACGGGGACGAGGACAGTGCTGCCGCCCTGGGCCTGCTCTATGACTAC
TACAAGGTTCCTCGAGACAAGAGACTTCTGTCTGTGAGCAAAGCAAGTGACAGCCAAGAAGACCAGGATA
AAAGAAACTGCCTTGGCACCAGTGAAGCCCAGATCAATTTGAGCGGAGGCGAGAACAGAGTGCAGGTTCT
GAAGACTGTCCCGGTGAACCTCTGTCTAAGTCAAGACCACATGGAGAATTCGAAGCGCGAGCAGTACAGT
GTATCCATCACCGAGAGCTCTGCCGTCATCCCCGTGTCAGGCATCACCGTGGTGAAAGCCGAGGATTTCA
CACCGGTGTTCATGGCGCCCCCGGTGCACTATCCCCGCGCGGACAGTGAGGAGCAGCGCGTGGTTATCTT
TGAACAGACTCAGTACGACCTGCCCTCCATAGCCAGCCACAGCTCCTATCTCAAGGACGACCAGCGCAGC
ACGCCGGACAGCACCTACAGCGAGAGCTTTAAGGACGGCGCCTCGGAGAAATTTCGGAGTACTTCTGTTG
GTGCTGACGAGTATACATATGACCAGACGGGAAGTGGTACATTTCAGTACACCCTGGAAGCCACCAAATC
TCTCCGTCAGAAGCAGGGGGAGGGCCCCATGACCTACCTCAACAAAGGACAATTCTATGCCATAACACTC
AGTGAGACTGGAGACAACAAATGCTTCCGACACCCCATCAGCAAAGTCAGGAGTGTGGTGATGGTGGTCT
TTAGTGAAGACAAAAACCGAGATGAGCAGCTGAAATACTGGAAGTACTGGCACTCCCGGCAGCACACTGC
CAAGCAGAGGGTCCTTGACATTGCTGATTACAAGGAGAGCTTCAACACCATCGGGAACATTGAAGAGATC
GCATACAATGCTGTTTCCTTCACCTGGGATGTGAACGAGGAGGCAAAGATTTTTATCACCGTGAATTGCC
TGAGTACAGATTTCTCCTCCCAAAAGGGTGTAAAAGGACTTCCCCTGATGATTCAGATCGACACGTACAG
CTACAACAACCGCAGCAATAAACCCATCCACAGAGCATACTGCCAGATCAAGGTCTTCTGTGACAAGGGA
GCAGAAAGAAAAATCCGGGATGAAGAGAGAAAGCAGAACAGGAAGAAAGGGAAGGGCCAGGCCTCTCAAG
CCCAGTGCAACAACTCCTCTGATGGGAAGATGGCCGCCATACCGTTACAGAAGAAGAGTGACATCACGTA
CTTCAAAACCATGCCCGACCTGCACTCACAGCCTGTGCTCTTCATACCAGATGTTCACTTTGCAAACCTA
CAGAGGACCGGACAGGTTTATTACAACACAGACGATGAGCGAGAAGGCAGCAGCGTCCTTGTTAAGCGGA
TGTTCAGGCCCATGGAAGAGGAGTTTGGTCCAACACCGTCTAAGCAGATCAAAGAAGAAAACGTAAAACG
AGTGCTTTTATATGTGAGGAAGGAGAACGATGACGTCTTCGATGCTCTGATGCTGAAATCACCCACGGTG
AAGGGTCTGATGGAAGCGCTGTCTGAGAAGTATGGGCTGCCAGTGGAGAAAATCACAAAGCTTTATAAGA
AGAGCAAAAAGGGCATCCTGGTCAACATGGATGACAACATCATTGAGCACTATTCAAATGAGGACACCTT
CATCCTCAACATGGAGAGCATGGTGGAAGGCTTCAAGATCACGCTGATGGAGATCTGA

Translation (625 aa):
MSQESDNNKRLVALVPMPSDPPFNTRRAYTSEDEAWKSYLENPLTAATKAMMSINGDEDSAAALGLLYDY
YKVPRDKRLLSVSKASDSQEDQDKRNCLGTSEAQINLSGGENRVQVLKTVPVNLCLSQDHMENSKREQYS
VSITESSAVIPVSGITVVKAEDFTPVFMAPPVHYPRADSEEQRVVIFEQTQYDLPSIASHSSYLKDDQRS
TPDSTYSESFKDGASEKFRSTSVGADEYTYDQTGSGTFQYTLEATKSLRQKQGEGPMTYLNKGQFYAITL
SETGDNKCFRHPISKVRSVVMVVFSEDKNRDEQLKYWKYWHSRQHTAKQRVLDIADYKESFNTIGNIEEI
AYNAVSFTWDVNEEAKIFITVNCLSTDFSSQKGVKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVFCDKG
AERKIRDEERKQNRKKGKGQASQAQCNNSSDGKMAAIPLQKKSDITYFKTMPDLHSQPVLFIPDVHFANL
QRTGQVYYNTDDEREGSSVLVKRMFRPMEEEFGPTPSKQIKEENVKRVLLYVRKENDDVFDALMLKSPTV
KGLMEALSEKYGLPVEKITKLYKKSKKGILVNMDDNIIEHYSNEDTFILNMESMVEGFKITLMEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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