NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36429.1 Public Mus musculus 12 Slc26a4 23 108 98 CCDS HistoryNCBI Gene:23985Re-query CCDS DB by CCDS ID:36429.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001253.7 ENSMUSP00000001253.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001253.7Link to Ensembl Protein Viewer:ENSMUSP00000001253.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001253Re-query CCDS DB by Protein ID:ENSMUSP00000001253
Original member Current member NCBI NM_011867.4 NP_035997.1 Accepted alive Link to Nucleotide Sequence:NM_011867.4Link to Protein Sequence:NP_035997.1Re-query CCDS DB by Nucleotide ID:NM_011867Re-query CCDS DB by Protein ID:NP_035997Link to BLAST:NP_035997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035997.1 780 Q9R155 780 100% 0 0

Chromosomal Locations for CCDS 36429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31520344 31520367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31522442 31522525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31525451 31525596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31526601 31526655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31528619 31528849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31529459 31529554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31531697 31531789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31533145 31533214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31535250 31535356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31535611 31535706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31535836 31535913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31539183 31539296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31540504 31540651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31544226 31544308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31544430 31544582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31547102 31547266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31547846 31548030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31549913 31550023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31557040 31557179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31559160 31559323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGCAGCGCGGGGCGGCAGGTCGGAGCCGCCGCAGCTCGCCGAGTACAGCTGCAGTTACACGGTGTCGC
GGCCGGTGTACAGCGAGCTCGCCTTCCAGCAGCAGCGCGAGCGGCGCCTGCCTGAGCGCAGGACGCTGCG
GGACAGCCTGGCGCGGAGCTGCAGTTGCTCAAGAAAGAGAGCCTTTGGTGTGGTAAAGACTCTCCTGCCC
ATTCTGGACTGGCTCCCAAAATACCGAGTCAAGGAATGGCTCCTCAGTGACATCATCTCCGGAGTTAGCA
CTGGGCTGGTGGGTACCCTGCAAGGGATGGCTTATGCCCTGCTGGCAGCAGTACCTGTTCAGTTCGGTCT
CTACTCTGCCTTTTTCCCTATCCTGACGTATTTTGTGTTCGGAACATCAAGACACATCTCAGTTGGCCCT
TTCCCCGTGGTCAGTTTAATGGTGGGATCTGTTGTTCTGAGCATGGCTCCAGATGACCACTTTCTTGTGC
CCAGCGGTAACGGAAGTGCATTGAACTCGACCACGTTAGACACTGGAACCAGAGATGCGGCCCGAGTGTT
GCTTGCAAGCACACTCACTCTTCTAGTTGGAATCATACAGCTGGTGTTTGGAGGTTTGCAGATTGGATTC
ATAGTGAGGTACTTGGCAGACCCCTTGGTTGGCGGATTCACAACCGCTGCAGCCTTCCAAGTACTGGTCT
CACAGCTAAAGATCGTGCTCAATGTTTCAACCAAAAACTACAACGGCATCCTCTCCATTATCTACACACT
AATTGAGATTTTTCAAAATATCGGTGACACCAATATTGCCGATTTCATCGCTGGGCTGCTGACCATCATC
GTCTGTATGGCTGTTAAGGAACTAAATGATCGATTTAAACACAGAATCCCGGTGCCCATTCCTATAGAAG
TGATTGTGACAATAATTGCTACTGCCATTTCCTATGGGGCCAACTTGGAAAAGAACTACAATGCTGGCAT
TGTTAAGTCCATCCCAAGTGGGTTCTTGCCTCCTGTCCTGCCATCTGTGGGCCTGTTTTCGGACATGTTG
GCTGCATCCTTTTCCATTGCTGTGGTGGCTTACGCTATTGCAGTGTCTGTAGGAAAAGTCTACGCCACCA
AGCATGACTATGTCATCGATGGGAACCAGGAATTCATTGCCTTTGGGATAAGCAACGTCTTCTCTGGATT
TTTCTCCTGTTTTGTGGCTACCACTGCTCTGTCTCGAACGGCTGTCCAGGAGAGCACCGGGGGGAAGACA
CAGGTGGCTGGCCTCATCTCAGCTGTGATTGTGATGGTTGCCATCGTTGCCTTGGGGAGGCTTCTGGAAC
CCTTGCAGAAGTCAGTCTTGGCGGCCGTTGTCATTGCCAACCTGAAAGGGATGTTTATGCAGGTGTGTGA
CGTTCCTCGTCTGTGGAAGCAGAATAAGACTGATGCTGTTATCTGGGTGTTTACATGCATAATGTCCATC
ATTCTGGGGCTGGACCTCGGCTTGCTAGCTGGCCTTTTATTTGCACTACTGACTGTGGTCCTGAGAGTTC
AGTTCCCTTCATGGAATGGCCTTGGAAGTGTCCCCAGCACAGACATCTACAAAAGCATCACACATTATAA
AAACCTTGAAGAGCCTGAAGGGGTGAAGATCCTGAGATTTTCCAGTCCCATTTTTTACGGCAATGTCGAT
GGTTTTAAAAAATGTATCAATTCAACGGTTGGATTTGATGCCATTAGAGTATATAATAAGAGGCTGAAAG
CACTGAGAAGAATACAGAAACTCATCAAAAAAGGACAACTCAGGGCAACCAAGAACGGGATCATAAGTGA
TATTGGCTCATCAAATAATGCCTTCGAGCCTGATGAAGATGTGGAAGAGCCAGAGGAACTTAATATCCCA
ACCAAAGAAATTGAGATTCAAGTGGACTGGAACTCCGAACTCCCGGTGAAAGTGAATGTCCCAAAGGTGC
CAATCCACAGCCTGGTGCTGGATTGCGGAGCTGTATCCTTCCTGGATGTGGTAGGAGTGAGGTCATTGCG
AATGATTGTCAAAGAATTTCAGAGAATTGATGTGAATGTGTACTTTGCTCTGCTTCAAGATGATGTGTTA
GAAAAGATGGAGCAGTGTGGGTTCTTTGATGACAACATTAGAAAGGACAGATTCTTTCTGACGGTTCATG
ATGCAATCCTCCATCTGCAGAACCAGGTCAAATCCAGAGAAGGCCAGGATTCCCTGCTAGAGACGGTCGC
TCGCATTCGGGACTGTAAAGACCCTCTTGATCTGATGGAGGCAGAGATGAATGCAGAAGAGCTCGATGTT
CAGGATGAGGCCATGCGTAGACTTGCTTCCTGA

Translation (780 aa):
MAARGGRSEPPQLAEYSCSYTVSRPVYSELAFQQQRERRLPERRTLRDSLARSCSCSRKRAFGVVKTLLP
ILDWLPKYRVKEWLLSDIISGVSTGLVGTLQGMAYALLAAVPVQFGLYSAFFPILTYFVFGTSRHISVGP
FPVVSLMVGSVVLSMAPDDHFLVPSGNGSALNSTTLDTGTRDAARVLLASTLTLLVGIIQLVFGGLQIGF
IVRYLADPLVGGFTTAAAFQVLVSQLKIVLNVSTKNYNGILSIIYTLIEIFQNIGDTNIADFIAGLLTII
VCMAVKELNDRFKHRIPVPIPIEVIVTIIATAISYGANLEKNYNAGIVKSIPSGFLPPVLPSVGLFSDML
AASFSIAVVAYAIAVSVGKVYATKHDYVIDGNQEFIAFGISNVFSGFFSCFVATTALSRTAVQESTGGKT
QVAGLISAVIVMVAIVALGRLLEPLQKSVLAAVVIANLKGMFMQVCDVPRLWKQNKTDAVIWVFTCIMSI
ILGLDLGLLAGLLFALLTVVLRVQFPSWNGLGSVPSTDIYKSITHYKNLEEPEGVKILRFSSPIFYGNVD
GFKKCINSTVGFDAIRVYNKRLKALRRIQKLIKKGQLRATKNGIISDIGSSNNAFEPDEDVEEPEELNIP
TKEIEIQVDWNSELPVKVNVPKVPIHSLVLDCGAVSFLDVVGVRSLRMIVKEFQRIDVNVYFALLQDDVL
EKMEQCGFFDDNIRKDRFFLTVHDAILHLQNQVKSREGQDSLLETVARIRDCKDPLDLMEAEMNAEELDV
QDEAMRRLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH