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Report for CCDS20152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20152.1 Public Mus musculus 6 Jazf1 23 108 98 CCDS HistoryNCBI Gene:231986Re-query CCDS DB by CCDS ID:20152.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074541.5 ENSMUSP00000074129.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074541.5Link to Ensembl Protein Viewer:ENSMUSP00000074129.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074541Re-query CCDS DB by Protein ID:ENSMUSP00000074129
Original member NCBI NM_173406.3 NP_775582.2 Updated not alive Link to Nucleotide Sequence:NM_173406.3Link to Protein Sequence:NP_775582.2Re-query CCDS DB by Nucleotide ID:NM_173406Re-query CCDS DB by Protein ID:NP_775582
Current member NCBI NM_173406.4 NP_775582.2 Accepted alive Link to Nucleotide Sequence:NM_173406.4Link to Protein Sequence:NP_775582.2Re-query CCDS DB by Nucleotide ID:NM_173406Re-query CCDS DB by Protein ID:NP_775582Link to BLAST:NP_775582.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775582.2 243 Q80ZQ5-1 243 100% 0 0

Chromosomal Locations for CCDS 20152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52770204 52770380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52777535 52777704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52812103 52812299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52893999 52894071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53068453 53068567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAACACCTGCCGCTTCGGGGGCTGCGGACTCCACTTCC
CCACGCTGGCCGACCTCATCGAGCACATCGAGGACAACCACATCGACACAGACCCACGTGTTTTAGAAAA
GCAGGAGCTGCAGCAGCCGACCTATGTGGCCCTCAGTTACATCAATAGATTCATGACAGATGCTGCACGC
CGAGAACAGGAATCTCTGAAGAAGAAGATTCAGCCGAAGCTTTCACTAACCCTGTCCAGCTCCGTGTCTC
GAGGGAATGTGTCCACTCCACCTCGACATAGCAGTGGCAGCCTTACTCCCCCTGTGACCCCGCCCATCAC
GCCCTCCTCTTCATTCCGCAGCAGCACTCCAACAGGCAGCGAGTATGATGAGGAAGAGGTGGACTATGAG
GAGTCAGACAGTGATGAGTCCTGGACCACAGAGAGCGCCATCAGCTCTGAAGCAATCCTCAGCTCCATGT
GCATGAATGGAGGGGAAGAGAAGCCTTTCGCCTGCCCAGTTCCAGGGTGTAAAAAGAGATACAAGAATGT
GAATGGCATAAAGTACCATGCTAAGAATGGTCACCGAACACAGATTCGCGTCCGCAAACCATTCAAATGC
CGGTGTGGGAAGAGTTACAAGACAGCTCAGGGCCTGCGGCACCACACAATCAATTTCCATCCCCCAGTGT
CTGCCGAGATGATCAGGAAGATGCAGCAGTAG

Translation (243 aa):
MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAAR
REQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYE
ESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKC
RCGKSYKTAQGLRHHTINFHPPVSAEMIRKMQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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