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Report for CCDS11901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11901.1 Public Homo sapiens 18 TRAPPC8 24 110 108 CCDS HistoryNCBI Gene:22878Re-query CCDS DB by CCDS ID:11901.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11901.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283351.10 ENSP00000283351.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283351.10Link to Ensembl Protein Viewer:ENSP00000283351.4Re-query CCDS DB by Nucleotide ID:ENST00000283351Re-query CCDS DB by Protein ID:ENSP00000283351
Original member Current member NCBI NM_014939.5 NP_055754.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014939.5Link to Protein Sequence:NP_055754.3Re-query CCDS DB by Nucleotide ID:NM_014939Re-query CCDS DB by Protein ID:NP_055754Link to BLAST:NP_055754.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055754.3 1435 Q9Y2L5-1 1435 100% 0 0

Chromosomal Locations for CCDS 11901.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31830755 31830989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31832084 31832173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31839312 31839457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31846716 31846817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31849566 31849739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31852446 31852504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31852595 31852663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31853849 31853945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31855660 31855807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31857540 31857982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31864627 31864781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31866849 31866975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31867402 31867476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31870372 31870502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31870926 31871120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31873430 31873538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31874480 31874704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31890735 31890866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31897786 31897891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31900925 31901025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31907460 31907610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31908303 31908418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31908754 31909010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31909667 31909760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31913369 31913522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31916272 31916446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31917578 31917667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31931329 31931523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31942608 31942764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4308 nt):
ATGGCCCAGTGTGTACAATCAGTGCAGGAGCTAATCCCGGACTCCTTCGTCCCCTGTGTCGCTGCGCTGT
GCAGCGACGAAGCCGAGCGGCTCACTCGTCTCAATCACCTCAGCTTCGCGGAGCTGCTTAAGCCCTTCTC
CCGCCTCACTTCCGAGGTTCACATGAGAGATCCTAATAATCAACTTCACGTAATTAAAAATTTGAAGATA
GCAGTAAGCAACATTGTCACCCAGCCACCTCAGCCTGGAGCCATCCGGAAGCTTTTGAATGATGTTGTTT
CTGGCAGTCAGCCTGCAGAAGGATTAGTAGCTAATGTGATTACAGCAGGAGATTATGACCTTAACATCAG
TGCCACTACTCCATGGTTTGAGTCTTACAGAGAAACCTTTCTTCAGTCGATGCCAGCATTGGATCATGAA
TTTCTGAACCACTATTTAGCATGTATGTTGGTAGCGTCATCTAGTGAAGCTGAACCTGTGGAACAGTTTT
CAAAGTTGTCACAAGAACAGCATCGAATTCAGCACAACAGTGATTATTCCTACCCCAAGTGGTTTATACC
AAATACACTTAAATACTATGTACTTTTACATGATGTAAGTGCAGGAGATGAACAGAGAGCTGAATCAATT
TATGAAGAAATGAAACAGAAATATGGAACTCAGGGTTGCTATTTACTTAAAATTAATTCTCGAACATCTA
ATCGAGCATCAGATGAACAGATACCAGATCCTTGGAGTCAGTATCTCCAGAAAAATAGTATTCAAAACCA
GGAATCATATGAAGATGGCCCTTGTACTATAACTTCAAATAAGAATTCTGATAATAACTTGCTTTCATTG
GATGGATTAGATAACGAAGTCAAAGATGGCTTACCAAATAACTTTAGAGCTCACCCACTTCAGTTGGAGC
AATCCAGTGACCCTTCTAACAGTATTGATGGCCCAGATCATCTAAGATCTGCTTCATCGTTACATGAAAC
AAAGAAAGGAAATACTGGAATAATTCATGGTGCATGTTTAACACTTACTGATCATGATAGAATTCGACAG
TTTATACAAGAGTTCACATTTCGGGGCCTTTTGCCACATATAGAGAAAACAATTAGGCAATTAAACGATC
AGCTAATATCAAGAAAAGGTTTGAGTCGATCTCTATTTTCTGCAACTAAAAAATGGTTTAGTGGCAGTAA
AGTTCCAGAAAAGAGCATTAATGACCTGAAAAATACATCTGGCTTGCTGTATCCGCCGGAAGCACCAGAA
CTTCAAATCAGGAAAATGGCTGACTTATGTTTTTTGGTGCAGCATTATGATTTGGCTTACAGTTGCTATC
ATACTGCAAAGAAAGATTTTCTTAATGATCAAGCAATGCTTTATGCAGCTGGTGCCTTGGAAATGGCAGC
AGTGTCTGCTTTTCTTCAACCAGGAGCACCTAGGCCATATCCTGCTCATTACATGGATACAGCAATTCAG
ACATACAGAGATATCTGCAAGAATATGGTGTTGGCTGAAAGATGTGTGTTGCTTAGTGCTGAACTTTTAA
AAAGCCAAAGCAAATATTCAGAGGCTGCAGCTCTCCTAATACGGTTGACCAGTGAGGATTCTGATCTTCG
AAGTGCACTTCTTTTGGAACAGGCAGCACATTGCTTTATAAACATGAAAAGTCCCATGGTTAGAAAATAT
GCATTTCATATGATATTGGCAGGCCATCGATTTAGTAAAGCAGGGCAGAAAAAGCATGCTTTACGCTGTT
ATTGTCAAGCCATGCAAGTTTACAAAGGAAAAGGCTGGTCTCTTGCAGAGGATCACATTAATTTCACTAT
TGGGCGCCAGTCCTATACTCTTAGACAGCTGGATAATGCTGTGTCTGCTTTTAGGCATATTCTAATTAAT
GAAAGTAAACAATCTGCTGCTCAACAGGGGGCTTTCCTCAGAGAATATCTTTATGTTTACAAGAATGTAA
GTCAGCTGTCACCAGATGGTCCTTTGCCACAGCTTCCTTTACCGTATATTAACAGTTCAGCAACACGGGT
TTTTTTTGGCCATGACAGACGACCAGCGGATGGTGAAAAACAAGCAGCTACTCATGTAAGTCTTGATCAA
GAATATGATTCTGAATCCTCTCAGCAGTGGCGAGAACTTGAGGAACAAGTTGTTTCTGTGGTTAACAAAG
GAGTAATTCCATCCAATTTTCATCCCACACAATACTGTTTGAACAGTTACTCAGATAATTCAAGATTTCC
ACTTGCAGTTGTAGAAGAACCAATTACAGTGGAAGTGGCTTTTAGAAACCCTTTGAAAGTTCTACTTTTG
TTGACTGATTTGTCATTGCTTTGGAAGTTTCATCCTAAAGATTTCAGTGGAAAGGATAATGAAGAAGTTA
AACAACTAGTTACAAGTGAACCTGAAATGATTGGAGCTGAAGTTATTTCAGAGTTCTTAATTAATGGCGA
AGAATCAAAAGTGGCAAGACTAAAGCTCTTTCCCCATCACATAGGGGAGCTGCATATTCTGGGAGTTGTT
TATAATCTTGGCACTATTCAGGGCTCTATGACAGTAGATGGCATTGGTGCTCTTCCCGGATGTCACACAG
GAAAATATTCCTTGAGTATGTCAGTCCGAGGGAAGCAGGATTTAGAAATTCAAGGTCCTCGACTTAACAA
CACAAAAGAAGAGAAAACATCTGTTAAATATGGCCCTGATCGACGTTTAGATCCCATAATCACAGAAGAA
ATGCCACTGTTGGAGGTGTTCTTTATACATTTTCCTACAGGGCTTCTCTGTGGAGAAATCCGAAAAGCAT
ATGTAGAATTTGTCAATGTCAGCAAATGTCCACTTACTGGATTGAAGGTTGTTTCTAAACGTCCAGAGTT
CTTTACTTTCGGTGGTAATACTGCTGTTCTAACACCACTAAGTCCCTCAGCTTCTGAGAATTGTAGTGCT
TACAAGACTGTTGTGACAGATGCTACCTCTGTGTGTACAGCACTCATATCATCAGCTTCTTCTGTAGACT
TTGGCATTGGCACAGGAAGTCAACCAGAGGTGATTCCTGTTCCCCTTCCTGACACTGTTCTTCTACCCGG
AGCCTCAGTGCAGCTGCCAATGTGGTTACGTGGGCCTGATGAAGAAGGTGTCCATGAAATTAACTTTTTG
TTTTACTATGAAAGTGTCAAAAAGCAGCCAAAAATACGGCACAGAATATTAAGACACACTGCAATTATTT
GTACCAGTCGGTCTTTAAATGTACGGGCCACTGTCTGCAGAAGTAATTCTCTTGAAAATGAAGAAGGCAG
AGGAGGCAATATGCTAGTCTTTGTGGATGTGGAAAATACCAATACTAGTGAAGCAGGCGTTAAGGAATTC
CACATAGTGCAAGTATCAAGTAGTAGCAAACACTGGAAGTTACAGAAATCTGTAAATCTTTCTGAAAACA
AAGATACCAAACTTGCCAGTAGGGAGAAGGGAAAGTTTTGCTTTAAGGCAATAAGATGTGAGAAAGAAGA
AGCGGCCACACAGTCCTCTGAAAAATATACCTTTGCAGATATCATCTTTGGAAATGAACAGATAATAAGT
TCAGCAAGCCCATGTGCAGACTTCTTTTATCGAAGTTTATCTTCTGAATTGAAAAAACCACAAGCTCACT
TGCCTGTGCATACAGAAAAACAGTCAACAGAGGATGCTGTGAGATTGATTCAAAAATGCAGTGAGGTAGA
TTTGAATATTGTCATATTATGGAAGGCATACGTTGTGGAAGACAGTAAACAGCTTATTTTGGAAGGTCAA
CATCATGTTATTCTTCGCACTATAGGAAAAGAAGCCTTTTCATATCCTCAGAAACAGGAGCCACCAGAAA
TGGAACTATTGAAATTTTTCAGGCCAGAAAACATTACAGTTTCCTCAAGGCCATCAGTAGAGCAGCTTTC
TAGTCTCATTAAAACGAGTCTTCACTACCCAGAATCATTTAATCATCCATTTCATCAAAAAAGCCTTTGT
TTAGTACCAGTCACTCTTTTACTTTCCAATTGTTCTAAGGCTGATGTAGATGTCATAGTTGATCTTCGGC
ATAAAACAACAAGTCCAGAAGCACTGGAAATCCATGGATCATTCACATGGCTTGGACAAACACAGTATAA
ACTTCAACTTAAAAGCCAGGAGATTCACAGTCTGCAGCTGAAAGCATGCTTTGTTCATACAGGTGTTTAT
AACCTTGGAACTCCTAGGGTATTTGCCAAGTTATCGGACCAAGTTACAGTGTTTGAAACAAGTCAGCAGA
ATTCCATGCCTGCCCTGATCATCATCAGTAATGTGTGA

Translation (1435 aa):
MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVIKNLKI
AVSNIVTQPPQPGAIRKLLNDVVSGSQPAEGLVANVITAGDYDLNISATTPWFESYRETFLQSMPALDHE
FLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVSAGDEQRAESI
YEEMKQKYGTQGCYLLKINSRTSNRASDEQIPDPWSQYLQKNSIQNQESYEDGPCTITSNKNSDNNLLSL
DGLDNEVKDGLPNNFRAHPLQLEQSSDPSNSIDGPDHLRSASSLHETKKGNTGIIHGACLTLTDHDRIRQ
FIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINDLKNTSGLLYPPEAPE
LQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQ
TYRDICKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKY
AFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILIN
ESKQSAAQQGAFLREYLYVYKNVSQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQ
EYDSESSQQWRELEEQVVSVVNKGVIPSNFHPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLL
LTDLSLLWKFHPKDFSGKDNEEVKQLVTSEPEMIGAEVISEFLINGEESKVARLKLFPHHIGELHILGVV
YNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEE
MPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSPSASENCSA
YKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQLPMWLRGPDEEGVHEINFL
FYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEF
HIVQVSSSSKHWKLQKSVNLSENKDTKLASREKGKFCFKAIRCEKEEAATQSSEKYTFADIIFGNEQIIS
SASPCADFFYRSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIVILWKAYVVEDSKQLILEGQ
HHVILRTIGKEAFSYPQKQEPPEMELLKFFRPENITVSSRPSVEQLSSLIKTSLHYPESFNHPFHQKSLC
LVPVTLLLSNCSKADVDVIVDLRHKTTSPEALEIHGSFTWLGQTQYKLQLKSQEIHSLQLKACFVHTGVY
NLGTPRVFAKLSDQVTVFETSQQNSMPALIIISNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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