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Report for CCDS37822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37822.1 Public Mus musculus 18 Cep120 23 108 98 CCDS HistoryNCBI Gene:225523Re-query CCDS DB by CCDS ID:37822.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049811.7 ENSMUSP00000062433.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049811.7Link to Ensembl Protein Viewer:ENSMUSP00000062433.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049811Re-query CCDS DB by Protein ID:ENSMUSP00000062433
Original member Current member NCBI NM_178686.4 NP_848801.2 Accepted alive Link to Nucleotide Sequence:NM_178686.4Link to Protein Sequence:NP_848801.2Re-query CCDS DB by Nucleotide ID:NM_178686Re-query CCDS DB by Protein ID:NP_848801Link to BLAST:NP_848801.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848801.2 988 Q7TSG1-1 988 100% 0 0

Chromosomal Locations for CCDS 37822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 53683233 53683464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53685883 53686028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53697595 53697693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53703122 53703244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53706820 53706981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53709057 53709149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53713382 53713471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53714764 53714916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53715000 53715096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53718447 53718629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53719216 53719365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53721623 53721800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53723083 53723305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53724354 53724581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53727547 53727744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53731091 53731239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53735643 53735784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53738478 53738592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53740052 53740208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53744282 53744330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2967 nt):
ATGGTCCCCAAGTCCGACCAACTGCTCATCGTCGTATCCATCCTCGAAGGTCGCCATTTCCCCAAACGTC
CAAAGCATCTGCTCGTGGTGGAAGCAAAGTTTGATGGGGAGCAGCTGGCTACTGATCCTGTCGACCATAC
TGACCAGCCAGAATTTGCTACTGAGCTAGCCTGGGAGATTGACAGGAAAGTCCTTCATCAGCACCGGTTA
CAGCGCACGCCGATCAAACTCCAGTGCTTTGCCTTGGACCCGCAGACTTCTGCCAAGGAAACCGTAGGCT
ACATTGTTTTGGACTTAAGAACAGCTCAAGAAACAAAGCAGGCTCCCAAATGGTACCAGCTGCTGAGTAA
CAAATACACCAAGTTCAAGGCCGAGGTGCAGATCAGCCTCACTTTGGAGACAGATACAAAGGCCCAGGTG
GATAGTTATAAAGCAAAAGCAGCCCCGCCTCGGGATGGAAAAGTTCTTGCTAGCCTGGCAGGAGTTGACC
CGAAGGACATTGTTGCAGTATTGAATGAGGAAGGAGGCTACCATCAGATTGGACCAGCGGAGCACTGTAC
TGACCCCTTTATTTTGTCGGTGACGATTGCATTTGCCACCCAGTTGGAACAGTTAATTCCATGTACCATG
AAGCTTCCAGAAAGGCAGCCTGAGTTTTTCTTTTACTATTCTTTACTGGGAAACGATGTTACAAACGAGC
CTTTCAGTGATTTGATCAACCCAAACTTTGAGCCCGAGAGGGCATCTGTTCGTATACGCAGCAGTGTGGA
GATTCTGCGTGTGTACCTGGCTCTTCACTCTAAACTGCAGATCCATCTCTGCTGTGGAGACCAGTCACTT
GGCAGTACAGAAATACCTTTAAATGGATTACTGAAGAAGGGCAGTACAGAGATTAACCAGCATCCGGTCA
CAGTAGAAGGTGCTTTTACCCTTGACCCTCCAAACCGAGCCAAGCAGAAGCTAGCTCCAGTCCCTCTGGA
CCTGGCCCCAACTGTGGGCGTGTCCGTGGCTCTGCAGAGAGAAGGCATCGATTCCCAGTCTTTAATTGAA
TTAAAGACCCAGAATGGACATGAGGCAGAACATTCACAGAAGAGAGTTTTAACCCCCATAAAGGAGAAGA
CACTCACTGGGCCAAAATCACCAAGGGAGTCCCCTGCCCCGCCCCCACCTCCAAACCAGACGCCTCCAAC
CAAGGATGATGCAACAGAAAGTGAAGTGGAGAGCCTGCAGTATGACAAGGATCCAAAGCCCACTGTGAAG
GGCATCGGTTCTGTACCTGCTTCGCTGGCCCAGCCAGAGGCCACCTGTGGTGCGTCAGAAGTGGTGACAT
CAGGACAGAAGATTGCTGTTCCAGCGGCGTCACACCACTTCTGCTTCTCAGTAGACTTAAGAAGCGTCCA
TGACTTGGAACTCAGTTTTCCAGTCAACTGCATATTGAGGTACTCCTACCCATTCTTCGGCAGTGCAGCT
CCTATTATGACTAACCCTCCCGTAGAAGTTCGGAAAAACATGGAGGTTTTTCTTCCTCAGTCTTACTGTG
CGTTTGATTTTGCAACTATGCCTCACCAGCTCCAAGACACCTTCCTACGGATTCCTCTGCTGGTGGAGTT
ATGGCACAAGGATAAAATGAGTAAAGATTTACTCCTTGGGGTCGCAAGAATCCAGCTTTCTAATATCTTG
TCTTCAGAAAAGACCCGGTTTTTAGGTGCTAATGGTGAGCAGTGCTGGCGACAGACGTACAGTGAGAGCG
TGCCTGTGATAGCAGCCCAGGGGTCAAATAACAGGATATTAGACCTTTCTTATACAATGACACTGGAAGA
CTATGGCCTAGTGAAAATGCGTGAGATCTTTGTATCGGAGTCATCTCAGGGTGTGCCTGCTGTGGATCAG
AAGCCATCTTCGCCTCCTCCCGCTCCCTGCCCTTCTGAGATCCAGATGGAACCCAGAGAGACCTTAGAGT
ACAAGGCTGCCCTCGAGCTGGAGATGTGGAAAGAGATGCAGGAAGACATATTTGAAAGTCAGCTGAAGCA
AAAAGAACTGGCTCACATGCAAGCTCTTGCAGAAGAGTGGAAAAAAAGGGACCGGGAAAGAGAGTCACTA
GTGAAGAAAAAGGTAGCTGAATACAGTATTCTAGAAGGCAAACTTCAGAAGGCCCTCACGGAGCTAGAGA
CCCGTGAGCAGCAGCTGGCCAGTGCAGAAGCAGAGCTTCAGAGAGAGAGAAAGGAGCTGCAGTTAGAACG
GGAGCGGAACCTTCAAGAGCTGCAGGACTCTGTCCGAAGGGCCAGAGACGACTGTGTGTACCAAGTGGAG
CTGGAGAGGCTGAAGCTGAAGCAGCTGGAAGAGGACAAACAGCGGCTTCAGCAGCAGCTTAATGATGCTG
GCAATAAGTATAAGACTTTGGAAAAAGAGTTTCAGCAGTTCAAGGATCAACAGAACAACAAACCAGAAAT
CCGGCTGCAGTCAGAAATAAACCTCCTCACCTTGGAGAAGGTTGAACTTGAAAGAAAGTTGGAATCTGCA
ACCAAGTCTAAACTGCATTACAAGCAGCAGTGGGGCCGAGCTTTGAAAGAACTTGCCAGACTAAAGCAGA
GGGAGCAAGAAAGTCAAATGGCCCGCCTTAAAAAACAGCAGGAGGAGTTGGAGCAGATGCGGCTGCGTTA
CCTGGCGGCTGAGGAGAAAGAAACAGTGAGAACTGAGCAGCAGGAACTGCTGGATATAAGGAACGAGCTG
AACAGGTTAAGGCAGCAAGAACAGAACCAGTACCAGGACTGCAAAGAGATTGCAAGTGGGAAGCTGGGCA
GCCCGAGGGGCTCTGGGCTGGAAGAAGGCTTGGATGACTACCTGACACGCCTGATAGAGGAAAGGGACAC
TCTGATGAGAACGGGTGTCTATAACCATGAGGACCGCATAATAAGTGAACTCGACCGGCAGATCAGAGAG
GTTTTGACCAAAAACAGTGCCAGTTAA

Translation (988 aa):
MVPKSDQLLIVVSILEGRHFPKRPKHLLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKVLHQHRL
QRTPIKLQCFALDPQTSAKETVGYIVLDLRTAQETKQAPKWYQLLSNKYTKFKAEVQISLTLETDTKAQV
DSYKAKAAPPRDGKVLASLAGVDPKDIVAVLNEEGGYHQIGPAEHCTDPFILSVTIAFATQLEQLIPCTM
KLPERQPEFFFYYSLLGNDVTNEPFSDLINPNFEPERASVRIRSSVEILRVYLALHSKLQIHLCCGDQSL
GSTEIPLNGLLKKGSTEINQHPVTVEGAFTLDPPNRAKQKLAPVPLDLAPTVGVSVALQREGIDSQSLIE
LKTQNGHEAEHSQKRVLTPIKEKTLTGPKSPRESPAPPPPPNQTPPTKDDATESEVESLQYDKDPKPTVK
GIGSVPASLAQPEATCGASEVVTSGQKIAVPAASHHFCFSVDLRSVHDLELSFPVNCILRYSYPFFGSAA
PIMTNPPVEVRKNMEVFLPQSYCAFDFATMPHQLQDTFLRIPLLVELWHKDKMSKDLLLGVARIQLSNIL
SSEKTRFLGANGEQCWRQTYSESVPVIAAQGSNNRILDLSYTMTLEDYGLVKMREIFVSESSQGVPAVDQ
KPSSPPPAPCPSEIQMEPRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESL
VKKKVAEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDCVYQVE
LERLKLKQLEEDKQRLQQQLNDAGNKYKTLEKEFQQFKDQQNNKPEIRLQSEINLLTLEKVELERKLESA
TKSKLHYKQQWGRALKELARLKQREQESQMARLKKQQEELEQMRLRYLAAEEKETVRTEQQELLDIRNEL
NRLRQQEQNQYQDCKEIASGKLGSPRGSGLEEGLDDYLTRLIEERDTLMRTGVYNHEDRIISELDRQIRE
VLTKNSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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