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Report for CCDS25942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25942.1 Public Mus musculus 12 Mis18bp1 23 108 98 CCDS HistoryNCBI Gene:217653Re-query CCDS DB by CCDS ID:25942.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052201.8 ENSMUSP00000052109.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052201.8Link to Ensembl Protein Viewer:ENSMUSP00000052109.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000052201Re-query CCDS DB by Protein ID:ENSMUSP00000052109
Original member NCBI NM_172578.2 NP_766166.2 Updated not alive Link to Nucleotide Sequence:NM_172578.2Link to Protein Sequence:NP_766166.2Re-query CCDS DB by Nucleotide ID:NM_172578Re-query CCDS DB by Protein ID:NP_766166
Current member NCBI NM_172578.3 NP_766166.2 Accepted alive Link to Nucleotide Sequence:NM_172578.3Link to Protein Sequence:NP_766166.2Re-query CCDS DB by Nucleotide ID:NM_172578Re-query CCDS DB by Protein ID:NP_766166Link to BLAST:NP_766166.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766166.2 998 Q80WQ8-1 998 100% 0 0

Chromosomal Locations for CCDS 25942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 65133531 65133625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65133804 65133858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65136750 65136849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65138645 65138796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65140733 65140890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65143223 65143392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65148722 65149550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65152688 65152830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65153806 65153893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65154719 65154849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65156992 65157065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65158395 65158861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65161403 65161937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2997 nt):
ATGATTGTAACACCTTTGAAGCATTCAGGAATTCATTTGTCTTCTGGAACATTGCAAAGAAGAAATATGC
CTCTAGATGCAGTCTTTATTGACAGCATCCCTTCAGGCACACTCACTCCTTTGAAAGATTTGGTAAAATA
TCAGAAGTCCTCTCTAAAAGTTAATGGTCATAAAAAGAATCAGTTATTAGAAATAAGAACTTCTAACAAT
AAAGATCTATTTCAATCCACCATGTTATCAGAGGCTACCCTTCCAAACAGCTCTCTTGATATCAGTGTTA
TAAAGCCCAGCATGGATAGATTAAGAAATGAAATGATTTATGAATCACCAGGTAAAATCTTTCAAAGAAT
GAAAGCAAAAGTACAGCGTGACAAACAAGAACAACTGACAAGGAGCAGTAGCATGTTGGGATCACCACAG
GGTGAACACACCAAAGACTTTCCTCCTAACACGGATAAGAAAGCTCAGTTGCAACAAACCTATATCTGTG
AGGAAAAACAAACGTCGGTCCAATCCAATGACCCTTCATTGGGAGATCCTCCAATTCTGAACCAAGAACA
AAAAAATGTTTCAGCTTCGTGCATTTCAAAGAAGGCATTAACTAGAGCCCAGTTTGGCGGACAAGTTCTT
CATTCAAAAGAGAGTCCTGTTAGGATCACTGTGTCCAAAAAGAACACATTTGTTTTGGGAGGCATTGATT
GTACTTATGAAAAGTTTGAAAATACTGATGTTAACACCATTAGTTCTCTTTGTGTTCCTATTAAGAATCA
TAGCCAATCTATTACTTCTGATAATGATGTGACAACAGAAAGGACTGCAAAAGAGGATATTACAGAACCA
AATGAAGAGATGATGTCCAGAAGAACTATTCTTCAAGATCCCATAAAGAATACATCTAAAATTAAACGTT
CAAGTCCAAGACCTAATTTAACACTATCTGGCCGGTCTCAAAGAAAATGTACAAAGCTTGAAACTGTTGT
AAAAGAAGTAAAAAAATATCAGGCAGTCCACCTACAGGAATGGATGATTAAAGTCATCAATAATAATACT
GCTATATGTGTAGAAGGAAAGCTGGTAGATATGACTGATGTTTATTGGCATAGCAATGTAATTATAGAGC
GGATTAAACACAATGAACTTAGGACCTTATCAGGCAACATTTATATCTTAAAAGGATTGATAGACTCGGT
CTCCATGAAAGAAGCAGGATATCCCTGTTATCTCACAAGAAAATTTATGTTTGGATTTCCCCACAACTGG
AAGGAACACATTGATAAATTTCTAGAACAATTAAGGGCTGAAAAAAAGAACAAGACCAGACAGGAAACAG
CAAGAGTCCAAGAAAAACAAAAATCAAAAAAAAAAGATGCAGAAGATAAAGAAACTTATGTCCTCCAAAA
GGCCAGCATCACGTATGACCTTAATGATAATAGCTTAGAGAGAACTGAAGTACCCACTGATCCCTTGAAC
TCACTGGAACAGCCTACCTCCGGCAAAGAAAGAAGACACCCGCTTCTCAGTCAGAAGAGAGCTTATGTTT
TAATAACACCACTTAGAAACAAAAAGTTGATAGAGCAAAGATGTATAGACTACAGTCTCTCTATTGAAGG
AATATCGGACTTTTTCAAAGCAAAGCATCAAGAAGAAAGTGACTCAGATATACATGGAACTCCAAGTTCT
ACCAGTAAGTCTCAAGAGACCTTTGAACATAGAGTGGGATTTGAAGGCAATACCAAGGAGGACTGCAATG
AATGTGACATAATCACTGCCAGACATATTCAGATACCTTGCCCGAAAAGTAAACAAATGCTCACCAATGA
TTTTATGAAAAAGAACAAGTTGCCCTCAAAACTGCAGAAAACTGAAAATCAAATAGGTGTATCACAGTAT
TGCCGGTCCTCATCACATTTGTCAAGTGAAGAGAATGAAGTAGAAATTAAAAGTAGAACCAGAGCAAGAA
ATACAAAAGAAAGGCTGAATCGGGAGAGAGAAAACACAAACCACATCACAAAAGATATCCTCCTCATTTC
AGAAACTGAAGGTGAGAGAGCTTGTTATATCACACCAAAGAGACCTCGATCTTGTTATATCACACCAAAG
AGACCTCGATCTTCTGCTAAAGAGTCACATTACAAATCTGCTGTTAGCAAGGACTTTCTCACTGAAGGAA
AGGCATCTGATAGAACTAGCAGACAGCTGTTAGACCATCTACCTGGTTTAACTGATGATGAAGAATGGAG
TGAGCAAGAGTTACAGAAGCTACATTGTGCTTTTACATCTCTTCCAAAGCACAAACCTGGCTTTTGGTCA
GATGTGGCTATGGCAGTAGGTTCTCGAACTGCTGATGAGTGCCAGAAGAAATACACAGAAGAACCCCAAG
GCCAAGGATCCCGAAAACATGGCTCTAAGAAAAAGCAAGCCAACAAGGTCCAAAATGGTGAGAAAGACAG
TGCTGATGCCAAGACTATTAAGATAACTGCCAAAGTGGGAACTCTTAAAAGGAAACGACAAATGAGGGAT
TGCCTAGAACATTTGGCAAAAGACAACCATGATGATTTTTTCACTGCAACACCCTTGCAGAAACAAAGAA
TTCAGTTGCCAAGTTTTCAATACAGTCAAGATGATGATTTTCTGCTAGATATGGACAGGGATCCAGCATC
TCCATCATCAATTATTACTTCACCATTGAGAAGCACTACTCCACAATGTCAGCATTTCAGCCCCAGCATG
CTAGCCGCTATAGAAAGGAATAATTGTGATAGATATGTTTACCAAATGCAAAAAAATGCTAAAAAATATG
GCAAGAGTAATGGTGGCCTTGTCTGGGGCAACATTAGGAAAAAAACAGTTAAAACTGATCTCTCATCTCC
ACCACCAACACGGAAAGCCCTGTTTAACAAAGATTTAGGTAAAAACACTGATATTTCAAAGTATTTCATT
GATGATACAGAATCAGATGAAGAAGAGAAAGATTATTACTTTTCCAATTCTGACTGA

Translation (998 aa):
MIVTPLKHSGIHLSSGTLQRRNMPLDAVFIDSIPSGTLTPLKDLVKYQKSSLKVNGHKKNQLLEIRTSNN
KDLFQSTMLSEATLPNSSLDISVIKPSMDRLRNEMIYESPGKIFQRMKAKVQRDKQEQLTRSSSMLGSPQ
GEHTKDFPPNTDKKAQLQQTYICEEKQTSVQSNDPSLGDPPILNQEQKNVSASCISKKALTRAQFGGQVL
HSKESPVRITVSKKNTFVLGGIDCTYEKFENTDVNTISSLCVPIKNHSQSITSDNDVTTERTAKEDITEP
NEEMMSRRTILQDPIKNTSKIKRSSPRPNLTLSGRSQRKCTKLETVVKEVKKYQAVHLQEWMIKVINNNT
AICVEGKLVDMTDVYWHSNVIIERIKHNELRTLSGNIYILKGLIDSVSMKEAGYPCYLTRKFMFGFPHNW
KEHIDKFLEQLRAEKKNKTRQETARVQEKQKSKKKDAEDKETYVLQKASITYDLNDNSLERTEVPTDPLN
SLEQPTSGKERRHPLLSQKRAYVLITPLRNKKLIEQRCIDYSLSIEGISDFFKAKHQEESDSDIHGTPSS
TSKSQETFEHRVGFEGNTKEDCNECDIITARHIQIPCPKSKQMLTNDFMKKNKLPSKLQKTENQIGVSQY
CRSSSHLSSEENEVEIKSRTRARNTKERLNRERENTNHITKDILLISETEGERACYITPKRPRSCYITPK
RPRSSAKESHYKSAVSKDFLTEGKASDRTSRQLLDHLPGLTDDEEWSEQELQKLHCAFTSLPKHKPGFWS
DVAMAVGSRTADECQKKYTEEPQGQGSRKHGSKKKQANKVQNGEKDSADAKTIKITAKVGTLKRKRQMRD
CLEHLAKDNHDDFFTATPLQKQRIQLPSFQYSQDDDFLLDMDRDPASPSSIITSPLRSTTPQCQHFSPSM
LAAIERNNCDRYVYQMQKNAKKYGKSNGGLVWGNIRKKTVKTDLSSPPPTRKALFNKDLGKNTDISKYFI
DDTESDEEEKDYYFSNSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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