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Report for CCDS23137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23137.1 Public Mus musculus 9 Tagln 23 108 98 CCDS HistoryNCBI Gene:21345Re-query CCDS DB by CCDS ID:23137.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034590.3 ENSMUSP00000034590.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034590.3Link to Ensembl Protein Viewer:ENSMUSP00000034590.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034590Re-query CCDS DB by Protein ID:ENSMUSP00000034590
Original member Current member NCBI NM_011526.5 NP_035656.1 Accepted alive Link to Nucleotide Sequence:NM_011526.5Link to Protein Sequence:NP_035656.1Re-query CCDS DB by Nucleotide ID:NM_011526Re-query CCDS DB by Protein ID:NP_035656Link to BLAST:NP_035656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035656.1 201 P37804 201 100% 0 0

Chromosomal Locations for CCDS 23137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45930371 45930515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45930833 45930935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45931300 45931477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45931582 45931761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCCAACAAGGGTCCATCCTACGGCATGAGCCGAGAAGTGCAGTCCAAAATTGAGAAGAAGTATGACG
AG
GAGCTGGAGGAGCGACTAGTGGAGTGGATTGTAGTGCAGTGTGGCCCTGATGTAGGCCGCCCAGATCG
T
GGGCGCCTGGGCTTCCAGGTGTGGCTGAAGAATGGTGTGATTCTGAGCAAATTGGTGAACAGCCTGTAT
CCT
GAGGGATCGAAGCCAGTGAAGGTGCCTGAGAACCCACCCTCCATGGTCTTTAAGCAGATGGAACAGG
TG
GCTCAATTCTTGAAGGCAGCTGAAGATTATGGAGTCATCAAGACTGACATGTTCCAGACTGTTGACCT
C
TATGAAGGTAAGGATATGGCAGCAGTGCAGAGGACTCTAATGGCTTTGGGCAGTTTGGCTGTGACCAAA
AAC
GATGGAAACTACCGTGGAGATCCCAACTGGTTTATGAAGAAAGCCCAGGAGCATAAGAGGGACTTCA
CA
GACAGCCAACTGCAGGAGGGGAAGCACGTCATTGGCCTTCAAATGGGCAGCAACAGAGGAGCCTCGCA
G
GCTGGCATGACAGGCTATGGGCGACCCCGGCAGATCATCAGTTAG


Translation (201 aa):
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLY
P
EGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYE
GKDMAAVQRTLMALGSLAVTK
N
DGNYRGDPNWFM
KKAQEHKRDFTDSQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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