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Report for CCDS39296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39296.1 Public Mus musculus 5 Galnt17 23 108 98 CCDS HistoryNCBI Gene:212996Re-query CCDS DB by CCDS ID:39296.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086023.11 ENSMUSP00000083187.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086023.11Link to Ensembl Protein Viewer:ENSMUSP00000083187.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086023Re-query CCDS DB by Protein ID:ENSMUSP00000083187
Original member Current member NCBI NM_145218.3 NP_660253.2 Accepted alive Link to Nucleotide Sequence:NM_145218.3Link to Protein Sequence:NP_660253.2Re-query CCDS DB by Nucleotide ID:NM_145218Re-query CCDS DB by Protein ID:NP_660253Link to BLAST:NP_660253.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660253.2 598 Q7TT15-1 598 100% 0 0

Chromosomal Locations for CCDS 39296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 130876428 130876556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130877661 130877828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130895468 130895563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130900564 130900701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130906578 130906763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130963995 130964112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131081538 131081735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131085897 131086071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131111689 131111855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131150886 131151069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131306363 131306600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGCTTCACTGAGGAGAGTCAAAGTGTTGTTGGTGTTGAACTTGATCGCGGTGGCCGGCTTCGTGATCT
TTTTGGCTAAGTGTCGGCCTATCGCGGTGCGCAGCGGAGACGCCTTCCACGAGATCCGGCCTCGCGCAGA
GGTGGCCAACCTCAGCGCGCACAGCGCCAGCCCCATCCAGGATGCGGTCCTGAAGCGCTTGTCGCTGCTG
GAGGACATCGTCTACAGGCAGCTTAATGGCTTATCTAAATCCCTCGGGCTCATCGAAGGGTATGGTGGGA
GGGGCAAAGGAGGCCTTCCTGCCACCCTTTCCCCCTCTGAAGAAGAAAAAGCCAAAGGACCTCATGAGAA
ATATGGCTACAATTCCTACCTCAGTGAAAAGATCTCCTTGGACCGGTCTATTCCAGATTATCGTCCTACC
AAGTGTAAGGAGCTCAAATATTCCAAGGAGTTGCCCCAGATATCCATCATCTTCATCTTCGTGAATGAGG
CCCTGTCTGTGATACTTCGGTCAGTCCACAGCGCTGTCAATCACACACCCACACACCTGCTGAAGGAGAT
CATCCTGGTGGATGACAACAGTGATGAAGAGGAGCTGAAGGCCCCCTTGGAAGAGTACGTCCACAAACGC
TACCCTGGGCTGGTGAAGGTGGTACGCAATCAAAAGCGAGAAGGCCTGATCCGAGCACGCATCGAGGGCT
GGAAAGCGGCCACTGGCCAGGTCACTGGCTTTTTCGATGCTCACGTGGAATTCACTGCTGGCTGGGCTGA
GCCCGTTCTGTCCCGCATCCAGGAAAACCGGAAGCGGGTCATCCTCCCCTCCATCGACAACATCAAGCAG
GACAACTTCGAAGTGCAGCGCTACGAGAACTCCGCCCACGGGTACAGCTGGGAGCTGTGGTGCATGTACA
TCAGCCCCCCAAAAGACTGGTGGGACGCCGGAGATCCCTCTCTCCCCATCAGAACACCAGCCATGATTGG
CTGCTCATTTGTGGTCAACAGGAAATTCTTTGGTGAAATTGGTCTGCTGGACCCTGGAATGGATGTGTAC
GGAGGAGAGAATATTGAACTTGGGATCAAGGTATGGCTCTGTGGTGGCAGCATGGAGGTCCTTCCATGTT
CAAGGGTGGCCCACATTGAGCGGAAGAAGAAACCGTATAACAGTAACATCGGCTTTTACACCAAGAGGAA
TGCATTGCGAGTAGCCGAGGTCTGGATGGACGACTACAAGTCACATGTGTACATAGCGTGGAATCTGCCT
CTGGAGAATCCAGGCATCGATATCGGTGATGTCTCAGAAAGAAAAGCATTAAGGAAAAGTTTGAAATGTA
AGAATTTCCAGTGGTATTTGGACCATGTTTACCCAGAAATGAGAAGATACAACAACACTATCGCCTATGG
GGAGCTTCGTAATAATAAGGCCAAGGACGTCTGTCTGGACCAGGGGCCACTGGAAAACCACACAGCAATA
CTGTACCCATGCCACGGTTGGGGACCACAGCTCGCCCGCTACACCAAGGAAGGGTTCCTGCACTTAGGTG
CTCTGGGGACCACCACTCTCCTCCCTGATACCCGCTGCCTGGTGGACAACTCCAAGAGTCGGTTGCCGCA
GCTCCTGGATTGTGACAAGGTCAAGAGCAGCTTGTACAAGCGTTGGAACTTCATCCAGAATGGAGCCATC
ATGAATAAGGGCACAGGGCGCTGCCTAGAGGTGGAGAACCGGGGCCTGGCCGGCATCGACCTAATCCTTC
GAAGCTGTACTGGACAGAGATGGGCAATCAAGAATCCCATCAAGTAG

Translation (598 aa):
MASLRRVKVLLVLNLIAVAGFVIFLAKCRPIAVRSGDAFHEIRPRAEVANLSAHSASPIQDAVLKRLSLL
EDIVYRQLNGLSKSLGLIEGYGGRGKGGLPATLSPSEEEKAKGPHEKYGYNSYLSEKISLDRSIPDYRPT
KCKELKYSKELPQISIIFIFVNEALSVILRSVHSAVNHTPTHLLKEIILVDDNSDEEELKAPLEEYVHKR
YPGLVKVVRNQKREGLIRARIEGWKAATGQVTGFFDAHVEFTAGWAEPVLSRIQENRKRVILPSIDNIKQ
DNFEVQRYENSAHGYSWELWCMYISPPKDWWDAGDPSLPIRTPAMIGCSFVVNRKFFGEIGLLDPGMDVY
GGENIELGIKVWLCGGSMEVLPCSRVAHIERKKKPYNSNIGFYTKRNALRVAEVWMDDYKSHVYIAWNLP
LENPGIDIGDVSERKALRKSLKCKNFQWYLDHVYPEMRRYNNTIAYGELRNNKAKDVCLDQGPLENHTAI
LYPCHGWGPQLARYTKEGFLHLGALGTTTLLPDTRCLVDNSKSRLPQLLDCDKVKSSLYKRWNFIQNGAI
MNKGTGRCLEVENRGLAGIDLILRSCTGQRWAIKNPIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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