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Report for CCDS14867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14867.1 Public Mus musculus 1 Ptpn18 23 108 98 CCDS HistoryNCBI Gene:19253Re-query CCDS DB by CCDS ID:14867.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027302.13 ENSMUSP00000027302.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027302.13Link to Ensembl Protein Viewer:ENSMUSP00000027302.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027302Re-query CCDS DB by Protein ID:ENSMUSP00000027302
Original member Current member NCBI NM_011206.2 NP_035336.2 Accepted alive Link to Nucleotide Sequence:NM_011206.2Link to Protein Sequence:NP_035336.2Re-query CCDS DB by Nucleotide ID:NM_011206Re-query CCDS DB by Protein ID:NP_035336Link to BLAST:NP_035336.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035336.2 453 Q61152 453 100% 0 0

Chromosomal Locations for CCDS 14867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34459824 34459916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34462702 34462810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34463107 34463183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34463269 34463364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34463466 34463504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34468293 34468361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34469840 34469902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34470200 34470342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34471493 34471559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34471641 34471718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34471812 34471901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34472103 34472191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34472763 34472968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34473335 34473409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34473579 34473646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGAGTCGCCATACGGACTTGGTGAGGAGCTTCTTGGAGCAGCTGGAGGCCCGGGACTACCGGGAGGGGG
CAATCCTCGCTCGTGAGTTCAGCGACATTAAGGCCCGCTCAGTGGCCTGGAAGTCTGAAGGTGTGTGTTC
CACTAAAGCCGGCAGTCGGCTTGGGAACACGAACAAGAACCGCTACAAAGATGTGGTAGCATATGATGAG
ACAAGAGTCATCCTTTCCCTGCTCCAAGAGGAGGGACATGGAGATTACATCAATGCCAACTTCATCCGGG
GCATAGATGGAAGCCAGGCCTACATTGCGACGCAAGGACCCCTGCCTCACACACTGTTGGACTTCTGGCG
CCTGGTTTGGGAGTTTGGGGTCAAGGTAATCCTGATGGCCTGTCAAGAGACAGAAAATGGACGGAGGAAG
TGTGAACGCTACTGGGCCCGGGAGCAGGAGCCTCTAAAGGCTGGGCCTTTCTGCATCACCCTGACAAAGG
AGACAACACTGAATGCAGACATCACTCTCAGGACCCTCCAGGTTACATTCCAGAAGGAATTCCGCTCTGT
GCACCAGCTACAGTATATGTCCTGGCCAGACCACGGGGTTCCCAGCAGTTCTGATCACATTCTCACCATG
GTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAGTGCTGGCTGCG
GACGAACAGGTGTCCTGTGCGCTGTTGACTATGTGAGGCAGTTGCTGCTGACCCAGACAATCCCTCCCAA
CTTCAGTCTCTTCCAAGTGGTCCTGGAGATGCGGAAACAGCGGCCTGCAGCAGTGCAGACAGAGGAGCAG
TACAGGTTCCTGTACCACACAGTGGCTCAGCTATTCTCCCGCACTCTCCAGGACACCAGCCCCCACTACC
AGAACCTCAAGGAGAACTGCGCTCCAATCTGCAAGGAAGCCTTCTCCCTCAGGACCTCCTCAGCCCTGCC
TGCCACATCCCGGCCACCAGGAGGGGTTCTCAGGAGCATCTCGGTGCCTGCGCCCCCGACCCTCCCCATG
GCTGACACTTACGCTGTGGTGCAGAAGCGTGGCGCTTCGGCGGGCACAGGGCCGGGGCCGCGGGCGCCCA
CCAGCACGGACACCCCGATCTACAGCCAGGTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGA
CGCACAGGGGACAACGGCACTGCGCCGAGTTCCTGCGGACCAAAACTCTTCCGGGCCTGATGCCTACGAA
GAAGTAACAGATGGAGCACAGACTGGAGGGCTAGGCTTCAACTTGCGCATCGGAAGGCCCAAAGGGCCCC
GGGATCCTCCAGCAGAGTGGACACGGGTGTAA

Translation (453 aa):
MSRHTDLVRSFLEQLEARDYREGAILAREFSDIKARSVAWKSEGVCSTKAGSRLGNTNKNRYKDVVAYDE
TRVILSLLQEEGHGDYINANFIRGIDGSQAYIATQGPLPHTLLDFWRLVWEFGVKVILMACQETENGRRK
CERYWAREQEPLKAGPFCITLTKETTLNADITLRTLQVTFQKEFRSVHQLQYMSWPDHGVPSSSDHILTM
VEEARCLQGLGPGPLCVHCSAGCGRTGVLCAVDYVRQLLLTQTIPPNFSLFQVVLEMRKQRPAAVQTEEQ
YRFLYHTVAQLFSRTLQDTSPHYQNLKENCAPICKEAFSLRTSSALPATSRPPGGVLRSISVPAPPTLPM
ADTYAVVQKRGASAGTGPGPRAPTSTDTPIYSQVAPRAQRPVAHTEDAQGTTALRRVPADQNSSGPDAYE
EVTDGAQTGGLGFNLRIGRPKGPRDPPAEWTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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