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Report for CCDS18492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18492.1 Public Mus musculus 4 Cyp4a10 23 108 98 CCDS HistoryNCBI Gene:13117Re-query CCDS DB by CCDS ID:18492.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058785.9 ENSMUSP00000061126.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058785.9Link to Ensembl Protein Viewer:ENSMUSP00000061126.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058785Re-query CCDS DB by Protein ID:ENSMUSP00000061126
Original member Current member NCBI NM_010011.3 NP_034141.3 Accepted alive Link to Nucleotide Sequence:NM_010011.3Link to Protein Sequence:NP_034141.3Re-query CCDS DB by Nucleotide ID:NM_010011Re-query CCDS DB by Protein ID:NP_034141Link to BLAST:NP_034141.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034141.3 509 O88833 509 100% 0 0

Chromosomal Locations for CCDS 18492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115518322 115518510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115519630 115519774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115520252 115520296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115521068 115521195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115524248 115524372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115524725 115524879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115525302 115525408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115525498 115525688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115525785 115525918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115529235 115529299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115529442 115529518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115532531 115532699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGAGTGTCTCTGCTCTAAGCCCAACCCGATTTGCAGACAGCCTCTCTGGCTTCCTCCAAGTGGCCTCTG
TGCTCGGTCTGCTCCTGCTGCTGGTGAAAGCTGTCCAGTTCTACCTCCACAGGCAATGGCTACTCAAGGC
TTTCCAGCAGTTCCCATCACCTCCTTTTCACTGGTTCTTTGGGCATGAGAAGTTCAAAGGTGACCAAGAA
CTACAGGAAATTGTGTCGTGCATAGAGAACTTCCCAAGTGCCTTTCCTAGATGGTTCTGGGGAAGCAAGG
CCTACTTAACTGTCTATGACCCTGACTACATGAAAGTGATTCTGGGGCGATCAGATCCAAAGGCTAATGG
TGCGTACAGATTGCTAGCTCCTTGGATTGGGTATGGTTTGCTCTTGTTGAATGGACAGCCATGGTTCCAG
CACAGGAGGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTGAAAAACATGGCCGACT
CCATTCGATTGATGCTAGACAAATGGGAACGGCTGGCTGATCAGGACTCCTCTATAGAGATCTTTCAACA
CATCTCCTTAATGACCCTAGACACTGTCATGAAATGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTAGAT
GGAAATTACAGGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTATTTCACTCCCGTGTGAGGAATA
TCTTTCATCAGAATGATACCATCTACAAACTTTCTTCCAATGGCCGCTTGGCCAAACAAGCTTGTCAACT
TGCCCATGATCACACAGATGGAGTGATCAAGCTGAGAAAGGATCAGCTGCAGGATGAGGGAGAGCTGGAA
AAGATCAAGAAGAAGAGACGTTTGGATTTTCTGGATATCCTTTTATTTGCCAGAATGGAGAATGGGGACA
GCATGTCTGACAAGGACCTACGTGCTGAGGTGGACACATTCATGTTCGAGGGCCATGACACCACAGCCAG
TGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGATCACCAACAGAGATGCAGAGAGGAAGTT
CAGAGCCTCCTGGGGGATGGATCCTCTATCACCTGGGATCACCTAGACCAGATTCCCTATACCACAATGT
GCATCAAGGAGGCCCTAAGGCTCTACCCACCTGTCCCAGGCATTGTCAGAGAACTCAGTACATCTGTCAC
CTTCCCTGATGGACGCTCTTTACCCAAAGGTGTCCAGGTCACACTCTCCATTTATGGTCTCCACCACAAC
CCGAAGGTGTGGCCAAATCCAGAGGTGTTTGACCCTTCCAGGTTTGCACCAGACTCTCCCCGACACAGCC
ACTCATTCCTGCCCTTCTCAGGAGGAGCCAGGAACTGCATTGGGAAACAATTTGCTATGAGTGAGCTGAA
GGTGATTGTGGCCCTGACACTGCTCCGCTTCGAACTACTGCCAGATCCTACCAGGGTCCCCATGCCCTTA
GCCCGACTTGTGCTGAAGTCCAAAAATGGGATCTACCTACATCTCAAGAAGCTCCACTGA

Translation (509 aa):
MSVSALSPTRFADSLSGFLQVASVLGLLLLLVKAVQFYLHRQWLLKAFQQFPSPPFHWFFGHEKFKGDQE
LQEIVSCIENFPSAFPRWFWGSKAYLTVYDPDYMKVILGRSDPKANGAYRLLAPWIGYGLLLLNGQPWFQ
HRRMLTPAFHYDILKPYVKNMADSIRLMLDKWERLADQDSSIEIFQHISLMTLDTVMKCAFSHKGSVQVD
GNYRTYLQAIGDLNNLFHSRVRNIFHQNDTIYKLSSNGRLAKQACQLAHDHTDGVIKLRKDQLQDEGELE
KIKKKRRLDFLDILLFARMENGDSMSDKDLRAEVDTFMFEGHDTTASGVSWIFYALATHPDHQQRCREEV
QSLLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGVQVTLSIYGLHHN
PKVWPNPEVFDPSRFAPDSPRHSHSFLPFSGGARNCIGKQFAMSELKVIVALTLLRFELLPDPTRVPMPL
ARLVLKSKNGIYLHLKKLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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