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Report for CCDS16050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16050.1 Public Mus musculus 2 Acvr1 23 108 98 CCDS HistoryNCBI Gene:11477Re-query CCDS DB by CCDS ID:16050.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056376.11 ENSMUSP00000056784.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056376.11Link to Ensembl Protein Viewer:ENSMUSP00000056784.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056376Re-query CCDS DB by Protein ID:ENSMUSP00000056784
Original member Current member EBI ENSMUST00000090935.8 ENSMUSP00000088453.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090935.8Link to Ensembl Protein Viewer:ENSMUSP00000088453.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090935Re-query CCDS DB by Protein ID:ENSMUSP00000088453
Original member Current member EBI ENSMUST00000112599.7 ENSMUSP00000108218.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112599.7Link to Ensembl Protein Viewer:ENSMUSP00000108218.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112599Re-query CCDS DB by Protein ID:ENSMUSP00000108218
Original member Current member EBI ENSMUST00000112601.8 ENSMUSP00000108220.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112601.8Link to Ensembl Protein Viewer:ENSMUSP00000108220.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112601Re-query CCDS DB by Protein ID:ENSMUSP00000108220
Original member Current member NCBI NM_001110204.1 NP_001103674.1 Accepted alive Link to Nucleotide Sequence:NM_001110204.1Link to Protein Sequence:NP_001103674.1Re-query CCDS DB by Nucleotide ID:NM_001110204Re-query CCDS DB by Protein ID:NP_001103674Link to BLAST:NP_001103674.1
Original member Current member NCBI NM_001110205.1 NP_001103675.1 Accepted alive Link to Nucleotide Sequence:NM_001110205.1Link to Protein Sequence:NP_001103675.1Re-query CCDS DB by Nucleotide ID:NM_001110205Re-query CCDS DB by Protein ID:NP_001103675Link to BLAST:NP_001103675.1
Original member Current member NCBI NM_001355048.1 NP_001341977.1 Accepted alive Link to Nucleotide Sequence:NM_001355048.1Link to Protein Sequence:NP_001341977.1Re-query CCDS DB by Nucleotide ID:NM_001355048Re-query CCDS DB by Protein ID:NP_001341977Link to BLAST:NP_001341977.1
Original member Current member NCBI NM_001355049.1 NP_001341978.1 Accepted alive Link to Nucleotide Sequence:NM_001355049.1Link to Protein Sequence:NP_001341978.1Re-query CCDS DB by Nucleotide ID:NM_001355049Re-query CCDS DB by Protein ID:NP_001341978Link to BLAST:NP_001341978.1
Original member Current member NCBI NM_007394.3 NP_031420.2 Accepted alive Link to Nucleotide Sequence:NM_007394.3Link to Protein Sequence:NP_031420.2Re-query CCDS DB by Nucleotide ID:NM_007394Re-query CCDS DB by Protein ID:NP_031420Link to BLAST:NP_031420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103674.1 509 P37172 509 100% 0 0
NP_001103675.1 509 P37172 509 100% 0 0
NP_001341977.1 509 P37172 509 100% 0 0
NP_001341978.1 509 P37172 509 100% 0 0
NP_031420.2 509 P37172 509 100% 0 0

Chromosomal Locations for CCDS 16050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 58447539 58447673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58448314 58448444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58458885 58459082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58462881 58463156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58468514 58468660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58474173 58474272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58477605 58477816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58479665 58479928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58500484 58500550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGTCGATGGAGTAATGATCCTTCCTGTGCTAATGATGATGGCTTTCCCTTCCCCGAGTGTGGAAGATG
AG
AAGCCCAAGGTCAACCAGAAACTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACCA
C
TGTGAAGGCCAGCAGTGTTTTTCTTCTCTGAGCATCAACGATGGCTTCCACGTCTACCAGAAGGGCTGC
TTT
CAGGTTTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCACCTGGCCAGGCTGTGGAGTGCT
GC
CAAGGGGACTGGTGTAACAGGAACATCACGGCCCAGCTGCCCACTAAAGGGAAGTCCTTCCCCGGAAC
A
CAGAATTTCCACCTGGAAGTTGGCCTTATCATCCTCTCGGTGGTGTTTGCAGTATGTCTTTTAGCTTGC
ATC
CTTGGAGTTGCTCTCAGGAAGTTTAAGAGACGCAATCAAGAGCGCCTGAACCCCAGAGACGTGGAGT
AT
GGTACCATTGAAGGGCTCATCACCACCAATGTGGGAGACAGCACTCTAGCGGAACTACTAGATCACTC
G
TGTACATCAGGAAGTGGCTCCGGTCTTCCTTTCCTGGTACAGAGAACGGTGGCTCGCCAGATAACCCTG
TTG
GAGTGTGTCGGGAAGGGCCGGTATGGAGAAGTATGGAGGGGCAGCTGGCAAGGCGAAAATGTCGCTG
TG
AAGATCTTCTCCTCCCGAGACGAGAAGTCATGGTTCAGGGAGACGGAATTGTACAACACTGTGATGTT
G
AGGCATGAAAATATCTTAGGTTTCATCGCTTCAGACATGACCTCCAGACACTCCAGTACCCAGCTGTGG
CTC
ATCACACATTACCATGAAATGGGATCGTTGTATGACTACCTTCAGCTCACTACTCTGGATACGGTTA
GC
TGCCTTCGGATTGTACTGTCCATAGCCAGCGGCCTTGCCCATTTGCACATAGAGATATTTGGGACCCA
A
GGGAAGTCCGCCATTGCCCATCGAGATCTGAAGAGCAAAAACATCCTGGTGAAGAAGAATGGACAGTGC
TGC
ATAGCAGATTTGGGCCTGGCAGTCATGCATTCCCAGAGCACAAACCAGCTTGATGTGGGAAACAACC
CC
CGTGTGGGGACCAAGCGCTACATGGCTCCGGAAGTGCTCGATGAAACCATCCAAGTGGATTGCTTTGA
T
TCTTATAAGAGGGTCGATATTTGGGCCTTTGGCCTTGTTCTGTGGGAAGTGGCCAGGCGAATGGTGAGC
AAT
GGTATAGTGGAAGATTACAAGCCACCATTCTATGATGTGGTTCCCAATGACCCAAGTTTTGAAGATA
TG
AGGAAAGTTGTCTGTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCGACATT
A
ACTTCTCTGGCGAAGCTGATGAAAGAGTGCTGGTATCAGAACCCATCCGCAAGACTCACAGCTCTACGT
ATC
AAAAAGACTTTGACCAAAATCGATAATTCCCTAGACAAATTAAAAACTGACTGTTGA


Translation (509 aa):
MVDGVMILPVLMMMAFPSPSVEDEKPKVNQKLYMCVCEGLSCGNEDHCEGQQCFSSLSINDGFHVYQKGC
F
QVYEQGKMTCKTPPSPGQAVECCQGDWCNRNITAQLPTK
GKSFPGTQNFHLEVGLIILSVVFAVCLLAC
I
LGVALRKFKRRNQERLNPRDVEYGTIEGLITTNVGDSTLA
ELLDHSCTSGSGSGLPFLVQRTVARQITL
L
ECV
GKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW
L
ITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKSAIAHRDLKSKNILVKKNGQC
C
IADL
GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVS
N
GIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALR
I
KKTLTKIDNSLDKLKTDC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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