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Report for CCDS17857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17857.1 Public Mus musculus 3 Manba 23 108 98 CCDS HistoryNCBI Gene:110173Re-query CCDS DB by CCDS ID:17857.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029814.9 ENSMUSP00000029814.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029814.9Link to Ensembl Protein Viewer:ENSMUSP00000029814.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029814Re-query CCDS DB by Protein ID:ENSMUSP00000029814
Original member Current member NCBI NM_027288.3 NP_081564.3 Accepted alive Link to Nucleotide Sequence:NM_027288.3Link to Protein Sequence:NP_081564.3Re-query CCDS DB by Nucleotide ID:NM_027288Re-query CCDS DB by Protein ID:NP_081564Link to BLAST:NP_081564.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081564.3 879 Q8K2I4 879 99.6587% 0 3

Chromosomal Locations for CCDS 17857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135485681 135485857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135506909 135507003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135510975 135511080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135511803 135511973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135517903 135518026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135522992 135523167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135524517 135524627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135542312 135542463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135544726 135544843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135547550 135547636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135549200 135549367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135551063 135551281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135554760 135554924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135563205 135563349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135566488 135566630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135567464 135567721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135570215 135570439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGCATCTTCACCTGCTCTTGATATTGGCGCTATTTCGGGCCGGCTGCGTGGTGGCAGGTCCTAGCTACA
GCCTGAGCGGGAGCTGGCGGGTGAGCAACGGGAATGGCTCCCTGGAGCTACCGGCGACTGTCCCCGGCTA
TGTGCACAGCGCCCTGCACCAGCACGGGCTGATCCAGGATCCTTACTACAGATTTAATGACCTGAACTAT
AGATGGATTTCCTTAGATAACTGGACCTACAGCACGGAATTTAAAATCCCCTTTAATCTCAGTGAATGGC
AGAAGGTAAAGTTGATCTTTGATGGAGTTGACACGGTTGCAGAAATCCTGTTCAACAATGTCACCATTGG
GAAGACAGACAACATGTTCACTGGATACAGCTTTGACGTCACCAACGTAGTCAAAGACGTGAACTCCTTA
AAGCTGCAGTTCCGGTCAGCAGTGCAGTATGCAGAGTGTCAGAGCAAGGCTCACACTAGCTACCGGGTGC
CCCCAGAGTGCCCCCCGGTGGAGCAGAAGGGTGAATGTCACGTCAACTTCATCCGAAAGGCACAGTGTTC
CTTCAGCTGGGACTGGGGCCCTTCCTTCCCCTCTCAGGGAATCTGGAAAGATGTTAGAATCGAAGCCTAT
AACATTGCTCATCTGGATTACCTCACGTTTTTGCCAGTATATGATAACGCTTCTCAGGCCTGGAATATTG
AAATAGAGGCTTCTTTTGATGTCGCCAGCTCGAAGTCCGTTAGTGGTCAGGTGACAGTAGCCATCCCTCA
ACTGAAAACACAGCAGACAAACGACATTGAACTTCAACAAGAGCAAAGGATTGTTAAACTACTGGTCAAA
ATTAGGAAGGACGTTGCTGTGGAGACCTGGTGGCCTCGTGGACATGGGAACCAGACTGGGTACAACATGA
CAATTCTCTTTGCTCTGGATGGAGGCTTAAAAATTGAGAAAGCAGCCAAGGTTTATTTCAGGACAGTGCA
ACTGATAGAAGAGGGCATAAAAGGGTCTCCTGGTCTGAGTTTCTACTTCAAAATTAATGGGCTTCCTATA
TTTCTGAAAGGCTCAAATTGGATTCCAGCCGACTCCTTCCAAGACAAAGTCACTTCCGATCGGCTGCAGC
TCCTTTTCCAGTCCGTCGTGGATGCGAACATGAACACTCTGCGCGTGTGGGGGGGTGGCATCTACGAGCA
GGATGAGTTCTATGCGCTCTGTGATGAACTTGGGATAATGGTGTGGCAGGACTTTATGTTTGCCAGTGCC
CTTTATCCAACTGAGCCTGGCTTCTTAGCCTCCGTGAGGAAAGAAGTCACCTACCAGGTCAGGAGACTGA
AATCTCACCCCTCCATCATCATATGGAGTGGTAATAATGAGAATGAAGTGGCTCTCAGCGTGAACTGGTT
CCACGTAAATCCCAGGGACATGAAAACGTACATTGACGACTACGTGACCCTCTATGTGAAGAACATCAGG
AAGATTGTCTTATCAGAAGACAAGAGCCGTCCTTTCATTGCATCCAGCCCAACCAACGGGATGAAAACCA
TGGAGGAAGGCTGGATCTCTTACGACCCTTATAGCATCCAGTATGGTGATATTCATTTTTATAACTATGC
CGATGACTGCTGGAATTGGAAGATCTTCCCAAAAGCTCGATTAGTGTCTGAATATGGCTACCAGTCCTGG
CCTTCTTTTAGCACACTAGAAAAGGTCTCATCTCAGGAGGACTGGGCTTACAACAGCCGCTTCTCCCTTC
ATCGGCAGCATCATGAAGATGGCAACCATCAGATGCTGCACCAGGTCAAGATGCATTTCAAACTCCCCCA
GGGGACAGACCCATTGCGCACATTTAAAGACACTATCTACCTTACTCAGGTGATGCAAGCCCAGTGCATC
AAAACAGAAACCGAGTTCTACCTGCGCAGCCGCAGCGAGATAGTGGACGGAAAAGGCCACACCATGGGGG
CACTGTACTGGCAGCTGAACGATATCTGGCAGGCTCCTTCCTGGGCCTCTCTTGAGTACGGAGGGAAATG
GAAAATGCTGCATTACTTCGCTCGGCGTTTCTTCGCTCCACTGTTGCCAGTGGGATTTGAAGATGAAGGT
GTTTTTTACGTCTATGGCGTCTCAGATCTTCACAAAGACCACCACACGCAGCTCACCGTGAGGCTCCATC
ACTGGAGCTCCCCGAAGCCTTTGTGCTCCCTCGTGAATTCAAGTATTGTGGTTAAGGCCGGAGAGGCAGT
GGTTCTGTTCCAGATGCCGGTGTCTGAGCTGCTGAAGAGATGCAGGGGATGCACGAGGGAGACATGCGTG
GTCTCCTTTTACTTTTCAACTGACAAAGAACTCTTCAGCCCAACCAACTACCACTTCCTGTCCTCCCTGA
AGGACGCTAAAGGGCTGCTCGAGGCCAACATCACTGTCAACATCTCTCAGAAGGGCAATGTTTTTGTTTT
TGATCTGGAAACGTCTGCGGTCGCTCCCTTTGTTTGGTTGGATGTAGGAAGTATCCCCGGGAGATTTAGT
GATAACGGCTTCCTCATGATTCGGAAGAAACTCTCGGTACTGTTTTACCCTTGGAAGCCCACCAGCAAGA
GTGAGCTGCAGCAGGCCTTCAGCGTCACCTCCCTGACGGATACCTACTGA

Translation (879 aa):
MHLHLLLILALFRAGCVVAGPSYSLSGSWRVSNGNGSLELPATVPGYVHSALHQHGLIQDPYYRFNDLNY
RWISLDNWTYSTEFKIPFNLSEWQKVKLIFDGVDTVAEILFNNVTIGKTDNMFTGYSFDVTNVVKDVNSL
KLQFRSAVQYAECQSKAHTSYRVPPECPPVEQKGECHVNFIRKAQCSFSWDWGPSFPSQGIWKDVRIEAY
NIAHLDYLTFLPVYDNASQAWNIEIEASFDVASSKSVSGQVTVAIPQLKTQQTNDIELQQEQRIVKLLVK
IRKDVAVETWWPRGHGNQTGYNMTILFALDGGLKIEKAAKVYFRTVQLIEEGIKGSPGLSFYFKINGLPI
FLKGSNWIPADSFQDKVTSDRLQLLFQSVVDANMNTLRVWGGGIYEQDEFYALCDELGIMVWQDFMFASA
LYPTEPGFLASVRKEVTYQVRRLKSHPSIIIWSGNNENEVALSVNWFHVNPRDMKTYIDDYVTLYVKNIR
KIVLSEDKSRPFIASSPTNGMKTMEEGWISYDPYSIQYGDIHFYNYADDCWNWKIFPKARLVSEYGYQSW
PSFSTLEKVSSQEDWAYNSRFSLHRQHHEDGNHQMLHQVKMHFKLPQGTDPLRTFKDTIYLTQVMQAQCI
KTETEFYLRSRSEIVDGKGHTMGALYWQLNDIWQAPSWASLEYGGKWKMLHYFARRFFAPLLPVGFEDEG
VFYVYGVSDLHKDHHTQLTVRLHHWSSPKPLCSLVNSSIVVKAGEAVVLFQMPVSELLKRCRGCTRETCV
VSFYFSTDKELFSPTNYHFLSSLKDAKGLLEANITVNISQKGNVFVFDLETSAVAPFVWLDVGSIPGRFS
DNGFLMIRKKLSVLFYPWKPTSKSELQQAFSVTSLTDTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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