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Report for CCDS38887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38887.1 Public Mus musculus 4 Txlna 23 108 98 CCDS HistoryNCBI Gene:109658Re-query CCDS DB by CCDS ID:38887.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046425.15 ENSMUSP00000042153.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046425.15Link to Ensembl Protein Viewer:ENSMUSP00000042153.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046425Re-query CCDS DB by Protein ID:ENSMUSP00000042153
Original member Current member EBI ENSMUST00000084264.11 ENSMUSP00000081285.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084264.11Link to Ensembl Protein Viewer:ENSMUSP00000081285.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084264Re-query CCDS DB by Protein ID:ENSMUSP00000081285
Original member Current member NCBI NM_001005506.3 NP_001005506.2 Accepted alive Link to Nucleotide Sequence:NM_001005506.3Link to Protein Sequence:NP_001005506.2Re-query CCDS DB by Nucleotide ID:NM_001005506Re-query CCDS DB by Protein ID:NP_001005506Link to BLAST:NP_001005506.2
Original member Current member NCBI NM_001199695.1 NP_001186624.1 Accepted alive Link to Nucleotide Sequence:NM_001199695.1Link to Protein Sequence:NP_001186624.1Re-query CCDS DB by Nucleotide ID:NM_001199695Re-query CCDS DB by Protein ID:NP_001186624Link to BLAST:NP_001186624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005506.2 554 Q6PAM1-1 554 100% 0 0
NP_001186624.1 554 Q6PAM1-1 554 100% 0 0

Chromosomal Locations for CCDS 38887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129628881 129629198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129629551 129629646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129630312 129630404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129631280 129631354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129631591 129631710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129632090 129632284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129634375 129634545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129637096 129637187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129639229 129639567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129640256 129640421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGAAGAACCAAGACAAAAAGAATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGG
AAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGGGCGGAAGCCGAAGGTTCCAC
AAGCCAGGCTCCTGGGAAGACCGAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTCTGTGACGTC
TCTGAGGAGCTGAGCCGGCAGTTGGAAGACATCCTGAGTACATACTGTGTGGACAACAATCAGGGAGGCC
CGGCTGAGGAGGGAGCACAGGGTGAGCCCACTGAGCCGGAAGACACGGAGAAGTCCCGAACCTATGCAGC
CAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAGGGAGAGCCT
GGAACAGAGGAGATCCGAGCGAGTGATGAAGTTGGAGACCGAGACCATCGGAGGCCACAGGAGAAGAAGA
AAGCCAAGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGACACTGAACACGCTGAGTACCCCAGAGGA
GAAGCTGGCTGCACTGTGCAAGAAGTATGCTGAGCTGCTGGAAGAGCATCGGAACTCGCAGAAGCAGATG
AAGCTCCTGCAGAAGAAGCAGAGCCAGCTCGTGCAGGAGAAGGACCATCTGCGAGGGGAACACAGCAAGG
CTGTCCTGGCCCGAAGCAAGCTTGAGAGTCTGTGCCGGGAGCTGCAACGGCACAACCGGTCCCTGAAGGA
AGAAGGCGTGCAGCGAGCCCGTGAGGAGGAGGAGAAGCGCAAAGAAGTGACTTCACACTTCCAGGTGACA
CTGAATGACATTCAGCTGCAGATGGAACAGCATAACGAGCGAAACTCCAAGCTGCGCCAGGAGAATATGG
AGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGCAATACGAGCTTCGTGAGGAGCATATCGACAAAGTCTT
CAAACATAAGGACCTGCAGCAGCAGCTAGTGGACGCCAAGCTCCAGCAGGCCCAGGAGATGCTGAAGGAG
GCAGAGGAGCGGCACCAGCGAGAGAAGGAGTTTCTCCTGAAGGAAGCGGTGGAGTCCCAGAGGATGTGCG
AGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCTCGCCCTGTACACGGAGAAGTTTGAGGAGTT
CCAGAACACACTTTCCAAAAGCAGTGAAGTGTTCACCACGTTCAAACAGGAGATGGAAAAGATGACAAAG
AAGATCAAGAAGCTGGAGAAAGAAACCACCATGTATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGC
TGGAGATGGCTGAAGAGAAAACCGTCCGGGACAAAGAGCTGGAGGGCCTGCAGGTGAAAATCCAGCGGCT
GGAGAAGCTGTGCCGAGCACTGCAGACCGAGCGCAATGACCTCAACAAGAGGGTACAGGACCTGACTGCA
GGGGGCATCACTGACATTGGCTCTGAGCGGAGGCCAGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTG
AAAGTCCTGGGGCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTGCTGCTCGGGAGCCCCGAG
CACAGGAACAGCAGGCCAGACAGGGCCTGGAGAGCCCACCCCTGCCACTGCCTAG

Translation (554 aa):
MKNQDKKNGPAKHSNSKGSPGQREAGPEGAHGRPRQTAPGAEAEGSTSQAPGKTEGARAKAAQPGALCDV
SEELSRQLEDILSTYCVDNNQGGPAEEGAQGEPTEPEDTEKSRTYAARNGEPEPGIPVVNGEKETSKGEP
GTEEIRASDEVGDRDHRRPQEKKKAKGLGKEITLLMQTLNTLSTPEEKLAALCKKYAELLEEHRNSQKQM
KLLQKKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVT
LNDIQLQMEQHNERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKE
AEERHQREKEFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTK
KIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQRLEKLCRALQTERNDLNKRVQDLTA
GGITDIGSERRPEATTASKEQGVESPGAQPASSPRATDAPCCSGAPSTGTAGQTGPGEPTPATA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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