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Report for CCDS29936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29936.1 Public Mus musculus 19 Pdzd8 23 108 98 CCDS HistoryNCBI Gene:107368Re-query CCDS DB by CCDS ID:29936.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099274.3 ENSMUSP00000096880.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099274.3Link to Ensembl Protein Viewer:ENSMUSP00000096880.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099274Re-query CCDS DB by Protein ID:ENSMUSP00000096880
Original member Current member NCBI NM_001033222.3 NP_001028394.2 Accepted alive Link to Nucleotide Sequence:NM_001033222.3Link to Protein Sequence:NP_001028394.2Re-query CCDS DB by Nucleotide ID:NM_001033222Re-query CCDS DB by Protein ID:NP_001028394Link to BLAST:NP_001028394.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028394.2 1147 B9EJ80 1147 100% 0 0

Chromosomal Locations for CCDS 29936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 59299523 59301708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59305158 59305320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59315258 59315360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59327751 59327873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59344719 59345587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3444 nt):
ATGGGGCTGCTGCTCCTGATCCTGGCGTCGGCCGTGCTGGGCTCGTTCCTCACGCTGCTCGCACAGTTCC
TGCTACTCTACCGCAGACAGCCCGAGCCGCGGGCGGACGAAGCGGCCCGCGCGGGCGACGGCTTCCGCTA
CCTTAAGCCGGTGCCGGGCCTGCCCCTCAGGGAGTACCTTTATGGCGGCGGCGCCGAGGAGCTCGCTGCT
TGCTCCTCCGAGGCCGGCGCCAGCTCGACCCCGACCCCCGACAGCCCGGCCCCGCCGACGCTGGAGACCT
GCTACTTCCTCAACGCCACCATCCTGTTCCTGTTCCGGGAGCTGCGGGACACCGCGCTCGCCCGCCGCTG
GGTCACCAAGAAGATCAAGGTGGAGTTCGAGGAGCTGCTGCAGACCAAGACGGCCGGCCGCCTGCTGGAG
GGGCTGAGTCTGCGCGACGTGTTCCTGGGCGACACGGTGCCCTTCATCAAGACCATCCGGCTGGTGCGGC
CCGTGGTGGCCTCGGGCACCGGCGAGCCCGACGACCCCGACGGGGACGCGCTGCCCGCCACCTGCCCGGA
GGAGCTGGCCTTTGAAGCGGAGGTGGAGTACAACGGCGGTTTCCACCTGGCCATCGACGTGGACCTGGTG
TTTGGCAAGTCCGCCTACCTGTTCGTGAAGCTGTCTCGCGTGGTGGGGAGGCTGCGCTTCGTCCTCACCC
GCGTGCCCTTCACCCACTGGTTCTTCTCCTTCGTGGAGGACCCGCTGATTGACTTCGAGGTGCGCTCCCA
GTTCGAGGGGCGGCCCATGCCCCAGCTCACCTCCATCATCGTCAACCAGCTCAAGAAGATCATCAAGCGC
AAGCACACCCTGCCCAGTTACAAGATCAGGTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTG
AAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTT
AGAATGTAGCAGGTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTG
AGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACGGTTGAATTAATAAAAGGGAATTTAC
AAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAAC
TGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGGT
GTGAAAATCACATCGACCCTGCAGGTGCTGAAGCTCATCAAGCAGGCTGGGGACCGCGTGCTGGTGTACT
ACCAGAGGCCGGCTGGGCAGAGCAGCCAAGACAGCCTGGGCCAGTTGGAAGAAAGCTTCTTGTCCAGCTC
CTGCCAGGCAGCCTACGAAGAGGACGCTGCTGGGCTGTCAGCGGACACTGAAAACAGAGACCTAGATTCT
GAATTCGAAGACTTGGCGAGTGATGTCAGAGTACAGACAGAGTTGAAAGAGGAGACACAGCCGTTGAGTC
ACAGTCCCAAACGTACTCCAACAACACTTTCTATTAAACCCCTTGGCGCTATATCCCCGGTTTTAAATCG
TAAATTAATTTCAGGAATCCACCCACCACCACAAAAACTTCCATCCAAAGAAGGAAATAAACCATCAACT
CTAAAAACTTCAGAGACCACAGAAGCAGCACAAGTGTCCAAACCCCAAGGACCCACTTTCAAACCACCTG
TGCCACCGCGACCACAGGGGAGAGTGCCTCTGCCTCCCACTGACACCTCAGCCCAAGCAGACCCGGAAGC
CCCAGAAAAGCCAGACAAGGTGCTGCTCCCTCCTCCTCCTGCAGATAAACCTGCCGAGAAGCAAGTGAAG
AGTGTGGATCAAGGAGAAGATGTGGCAGCAGGTAAGCAGTCTTCAGCGAAGCAGGAAGGAGTGAAAGATC
TTCCTTCAGAAAGTTCTGCTCCTACTAAAGACTCTTCAGATGACCCTCAGATGTGGGAATCCTCAGAGGT
TCTATATCGCAACAAGGTGGGAAAGTGGTCAAGAACCAGAGCGTCCTGTGTGTTTGACATAGAAGCCTGC
CATAGGTACCTGAACATCGCACTGTGGTGCAGGGATCCTTTCAAGTTAGGAGGTCTCATCTGTTTGGGGC
ATGTTAGTTTAAAACTTGAGGAAGTGGCTTTAGGATGTCTAGCTACATCAAACATGGAATACCTTACAAA
GTTCAGACTGGAACCCCCTACACCTAAGGCCATGGTCACTAGAACTGCACTACGTAATCTGAGTATGCAA
AAGGGCTTTAATGACAAATTTTGTTTTGGTGACATTACTATTCATTTCAAGTATTTGAAGGAAGGAGAAC
CAGACCACCACATAGTTCCTAATGTAGAGAAAGAAAAAGAACTCCATTTGGTTGAGGAGGTTTCTACACT
CCCTAAAGAAGAGCATTTTGTGGGACAGATGAGTTTGTCAGAAAATAAACATAGTTTCCAAGATACTCAG
TTCCAGAACCCAACTTGGTGTGATTACTGTAAGAAAAAAGTTTGGACAAAAGCTGCTTCCCAGTGTATGT
TCTGTGCTTATGTTTGTCATAAAAAATGTCAGGAAAAGTGTCTAGCTGAGACACCTCTTTGTGGAGCAAC
TGAGAGGCGAATAGACCGGACCCTGAAAAACCTCAGGCTGGAAGGACAGGACCCACTCTTGGGCCTTCCT
CCTCGTGTTGAGATAGAAGCTAACAAGTCAGTCAATAAAACAACAGGGTTGACAAGGCACATCATTAATA
CGAGCTCTCGTTTACTAAATCTGCGTCAAGTCTCTAAAACTCGCCTTTCTGAACCAGGAACAGATCTTGT
AGAACCTTCACCAAAACACACACCCAATACGTCAGACAATGAAGGCAGTGACACAGAGGTCTGTGGTTCA
AACAGTCCTTCCAAACGAGGAAACAGTGCAGGAATAAAGTTAATGAGAAAGGAAGGAGGGCTGGATGACA
GTGTTTTCATTGCAGTAAAGGAAATTGGTCGTGATCTGTACAGAGGCTTGCCGACAGAAGAGAGGATCCA
GAAGCTGGAGTTCATGTTGGATAAGCTACAGAATGAAATTGATCAGGAGCTGGAACACAACAATTCCCTT
GTTAGAGAAGAAAAGGAAACAAATGATACAAGGAAAAAGTCAGTTCTTTCTGCTGCTTTAGCTAAATCGG
GAGAAAGACTACAAGCTCTGACACTTCTGATGATCCACTACAGAGCGGGAATCGAAGATATTGAAACCCT
AGAAAATCTGTCTTTAGACCAGCACTCGAAAAAGATGAACAAGTACGCAGATGATACAGAAGAAGACCTC
GATAGTGAGATAAGCCAGTTGATAGACTCTCAGCCATTCAGCAACATTTCCGATGACTTGTTCGGCCCAT
CTGAGTCAGTGTAA

Translation (1147 aa):
MGLLLLILASAVLGSFLTLLAQFLLLYRRQPEPRADEAARAGDGFRYLKPVPGLPLREYLYGGGAEELAA
CSSEAGASSTPTPDSPAPPTLETCYFLNATILFLFRELRDTALARRWVTKKIKVEFEELLQTKTAGRLLE
GLSLRDVFLGDTVPFIKTIRLVRPVVASGTGEPDDPDGDALPATCPEELAFEAEVEYNGGFHLAIDVDLV
FGKSAYLFVKLSRVVGRLRFVLTRVPFTHWFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLKKIIKR
KHTLPSYKIRFKPFFPYQALQGFEEDEELIHIQQWALTEGRLKVTLLECSRLFIFGSYDRETNVHCTLEL
SSGVWEEKQRSSIKTVELIKGNLQSVGLTLRLVQSTDGYAGHVIIETVAPNSPAAMADLQRGDRLIAIGG
VKITSTLQVLKLIKQAGDRVLVYYQRPAGQSSQDSLGQLEESFLSSSCQAAYEEDAAGLSADTENRDLDS
EFEDLASDVRVQTELKEETQPLSHSPKRTPTTLSIKPLGAISPVLNRKLISGIHPPPQKLPSKEGNKPST
LKTSETTEAAQVSKPQGPTFKPPVPPRPQGRVPLPPTDTSAQADPEAPEKPDKVLLPPPPADKPAEKQVK
SVDQGEDVAAGKQSSAKQEGVKDLPSESSAPTKDSSDDPQMWESSEVLYRNKVGKWSRTRASCVFDIEAC
HRYLNIALWCRDPFKLGGLICLGHVSLKLEEVALGCLATSNMEYLTKFRLEPPTPKAMVTRTALRNLSMQ
KGFNDKFCFGDITIHFKYLKEGEPDHHIVPNVEKEKELHLVEEVSTLPKEEHFVGQMSLSENKHSFQDTQ
FQNPTWCDYCKKKVWTKAASQCMFCAYVCHKKCQEKCLAETPLCGATERRIDRTLKNLRLEGQDPLLGLP
PRVEIEANKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPGTDLVEPSPKHTPNTSDNEGSDTEVCGS
NSPSKRGNSAGIKLMRKEGGLDDSVFIAVKEIGRDLYRGLPTEERIQKLEFMLDKLQNEIDQELEHNNSL
VREEKETNDTRKKSVLSAALAKSGERLQALTLLMIHYRAGIEDIETLENLSLDQHSKKMNKYADDTEEDL
DSEISQLIDSQPFSNISDDLFGPSESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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