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Report for CCDS23925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23925.1 Public Mus musculus 10 Upb1 23 108 98 CCDS HistoryNCBI Gene:103149Re-query CCDS DB by CCDS ID:23925.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039925.7 ENSMUSP00000049342.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039925.7Link to Ensembl Protein Viewer:ENSMUSP00000049342.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039925Re-query CCDS DB by Protein ID:ENSMUSP00000049342
Original member Current member NCBI NM_133995.4 NP_598756.1 Accepted alive Link to Nucleotide Sequence:NM_133995.4Link to Protein Sequence:NP_598756.1Re-query CCDS DB by Nucleotide ID:NM_133995Re-query CCDS DB by Protein ID:NP_598756Link to BLAST:NP_598756.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598756.1 393 Q8VC97 393 100% 0 0

Chromosomal Locations for CCDS 23925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75407056 75407159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75412767 75412938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75414990 75415077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75424493 75424587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75428181 75428342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75429962 75430131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75436146 75436227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75436876 75436918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75438057 75438211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75439854 75439964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCGGGACCGGAGTGGCAGTCCCTGGAGCAGTGCCTGGAAAAACATCTGCCGCCTGACGATTTGGCCC
AGGTGAAGCGAATTCTCTACGGCAAGCAGACTAGGAATCTCGATCTGCCCAGAGAAGCTTTAAAAGCTGC
CTCAGAAAGGAACTTTGAACTGAAGGGATATGCCTTCGGGGCAGCCAAGGAGCAGCAGAGATGCCCCCAG
ATCGTGCGCGTGGGGCTCGTTCAGAACAGAATCCCGCTCCCCACTTCTGCCCCCGTGGCAGAACAGGTCT
CTGCGCTCCACAAGAGCATAGAGGAGATTGCTGAGGTGGCCGCAATGTGTGGAGTCAATATCATCTGTTT
CCAGGAAGCATGGAATATGCCGTTCGCTTTTTGTACACGAGAGAAACTTCCTTGGACAGAATTTGCTGAG
TCGGCCGAGGATGGGCTCACCACCAGGTTCTGTCAGAAGCTGGCAAAGAAGCACAACATGGTGGTGGTGT
CTCCAATCTTGGAGCGTGATAGAGAGCATGGGGGAGTTCTGTGGAACACAGCTGTGGTGATCTCCAATTC
AGGGCTGGTCATGGGGAAGACCAGAAAGAACCACATCCCCAGAGTGGGAGACTTCAACGAGTCCACTTAC
TACATGGAGGGAAACCTGGGCCACCCCGTGTTCCAGACCCAGTTTGGCAGGATTGCAGTGAACATTTGCT
ATGGGCGGCACCACCCCCTCAACTGGCTCATGTACAGCATCAACGGAGCTGAAATCATCTTCAACCCTTC
GGCCACCATTGGAGAACTCAGTGAGTCCTTGTGGCCGATCGAAGCCAGAAATGCAGCCATTGCCAATCAC
TGCTTCACCTGTGCTCTCAACCGTGTGGGTCAGGAACACTTCCCCAATGAGTTTACTTCTGGAGATGGAA
AGAAAGCTCACCATGACCTCGGCTACTTCTATGGTTCGAGCTATGTGGCAGCTCCCGATGGCAGCCGGAC
CCCCGGCCTCTCCCGTAATCAGGATGGGCTGCTGGTCACGGAGCTCAACCTCAATCTCTGCCAGCAGATC
AATGATTTCTGGACTTTCAAGATGACGGGACGACTTGAGATGTATGCCCGGGAACTTGCCGAAGCGGTCA
AACCCAACTACAGTCCCAACATTGTGAAGGAAGACCTGGTACTAGCCCCTAGCTCGGGTTAG

Translation (393 aa):
MAGPEWQSLEQCLEKHLPPDDLAQVKRILYGKQTRNLDLPREALKAASERNFELKGYAFGAAKEQQRCPQ
IVRVGLVQNRIPLPTSAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAE
SAEDGLTTRFCQKLAKKHNMVVVSPILERDREHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNESTY
YMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGELSESLWPIEARNAAIANH
CFTCALNRVGQEHFPNEFTSGDGKKAHHDLGYFYGSSYVAAPDGSRTPGLSRNQDGLLVTELNLNLCQQI
NDFWTFKMTGRLEMYARELAEAVKPNYSPNIVKEDLVLAPSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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