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Report for CCDS26989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26989.1 Public Mus musculus 14 Atg14 23 108 98 CCDS HistoryNCBI Gene:100504663Re-query CCDS DB by CCDS ID:26989.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042988.6 ENSMUSP00000039047.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042988.6Link to Ensembl Protein Viewer:ENSMUSP00000039047.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042988Re-query CCDS DB by Protein ID:ENSMUSP00000039047
Original member Current member EBI ENSMUST00000226299.1 ENSMUSP00000153718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226299.1Link to Ensembl Protein Viewer:ENSMUSP00000153718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226299Re-query CCDS DB by Protein ID:ENSMUSP00000153718
Original member Current member NCBI NM_172599.4 NP_766187.1 Accepted alive Link to Nucleotide Sequence:NM_172599.4Link to Protein Sequence:NP_766187.1Re-query CCDS DB by Nucleotide ID:NM_172599Re-query CCDS DB by Protein ID:NP_766187Link to BLAST:NP_766187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766187.1 492 Q8CDJ3 492 100% 0 0

Chromosomal Locations for CCDS 26989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 47542837 47543143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47545628 47545713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47545791 47545881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47547241 47547358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47548919 47549148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47551248 47551485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47554560 47554641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47559174 47559216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47560621 47560683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47568186 47568406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCGTCTCCCAGTGGGAAGGGATCTTGGACGCCCGAGGCTCCTGGTTTTGGGCCGCGGGCGCTAGCAC
GG
GACCTGGTGGACTCGGTGGACGACGCCGAGGGCCTTTACGTGGCTGTTGAGCGGTGTCCTCTGTGCAA
C
ACCACTCGCCGGCGGTTGACTTGCGCCAAGTGCGTCCAGAGCGGTGATTTCGTCTATTTCGACGGCCGC
GAC
CGGGAGAGGTTTATTGACAAGAAGGAAAGACTAAGCCAACTTAAGAACAAGCAAGAAGAATTTCAGA
AA
GAAGTACTAAAAGCTATGGAAGGAAAGCGGCTTACAGATCAGTTGAGATGGAAAATAATGTCATGCAA
G
ATGAGGATTGAACAGCTGAAGCAAACAATATGTAAAGGAAATGAGGAAATGAAGAAAAATTCTGAAGGT
CTC
CTCAAGAACAAGGAAAAGAACCAGAAGCTTTACAGCCGAGCACAGCGGCACCAAGAGAAAAAGGAGA
AG
ATTCAGCGGCACAACCGCAAGCTTGGGGACCTGGTGGAGAAGAAGACCATTGACTTGAAGAGTCACTA
T
GAGCGGTTGGCGCGGCTTCGAAGGTCACACATCCTAGAGCTCACCTCCATCATATTCCCAATCGACGAA
GTG
AAGACTTCTGGGAGAGACCCTGCAGACGTGTCTTCAGAGACTGACAGTGCCATGACCTCAAGCATGG
TG
AGCAAGCTTGCTGAGGCCCGGAGGACAACTTACCTCTCTGGAAGATGGGTCTGTGATGACCACAATGG
T
GACACCAGCATTAGCATCACAGGCCCGTGGATTAGCCTACCAAACAACGGGGACTACTCTGCTTACTAC
AAT
TGGGTAGAAGAGAAGAAAACAACCCAAGGACCTGACATGGAGCATAACAACCCCGCCTACACTATCA
GC
GCCGCGCTGGGCTACGCCACGCAGCTCGTCAACATTGTGTCTCACATACTTGACATCAATCTTCCCAA
A
AAGCTGTGCAACAGCGAGTTCTGTGGCGAAAACCTCAGCAAGCAGAAACTGACACGCGCAGTGAGGAAA
CTG
AACGCAAACATCCTTTACCTTTGTTCTTCTCAGCATGTAAATCTGGATCAGTTGCAACCACTGCACA
CA
CTCAGGAACCTGATGCACTTGGTCAGCCCGCGCTCTGAGCACCTAGGCAGGTCAGGACCCTTTGAAGT
T
CGAGCAGACCTCGAGGAGTCCATGGAATTTGTGGACCCTGGAGTTGCTGGAGAATCAGACGCGAGTGGA
GAT
GAGCGTGTAAGCGATGAGGAGACTGACCTGGGCACAGACTGGGAGAACCTGCCAAGCCCCCGATTCT
GT
GACATCCCTTCCCAGCCGGTGGAAGTGTCCCAGAGCCAGAGCACCCAGGTGTCCCCACCCATTGCCAG
C
AGCAGCGCTGGTGGGATGATCTCCTCCGCTGCGGCCTCGGTGACCTCTTGGTTCAAAGCTTACACTGGA
CAC
CGCTAA


Translation (492 aa):
MASPSGKGSWTPEAPGFGPRALARDLVDSVDDAEGLYVAVERCPLCNTTRRRLTCAKCVQSGDFVYFDGR
D
RE
RFIDKKERLSQLKNKQEEFQKEVLKAMEGKRLTDQLRWKIMSCKMRIEQLKQTICKGNEEMKKNSEG
L
LKNKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLKSHYERLARLRRSHILELTSIIFPIDE
V
KTSG
RDPADVSSETDSAMTSSMVSKLAEARRTTYLSGRWVCDDHNGDTSISITGPWISLPNNGDYSAYY
N
WVEEKKTTQGP
DMEHNNPAYTISAALGYATQLVNIVSHILDINLPKKLCNSEFCGENLSKQKLTRAVRK
L
NANILYLCSSQ
HVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFEVRADLEESMEFVDPGVAGESDASG
D
ERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQSQSTQVSPPIASSSAGGMISSAAASVTSWFKAYTG
H
R




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 Genome Browser Links:   Ensembl Genome Browser
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