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Report for CCDS53423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53423.1 Public Homo sapiens 1 UHMK1 22 109 92 CCDS HistoryNCBI Gene:127933Re-query CCDS DB by CCDS ID:53423.1Re-query CCDS DB by GeneID:127933See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000545294.5 ENSP00000441226.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545294.5Link to Ensembl Protein Viewer:ENSP00000441226.1Re-query CCDS DB by Nucleotide ID:ENST00000545294Re-query CCDS DB by Protein ID:ENSP00000441226
Original member Current member NCBI NM_001184763.1 NP_001171692.1 Accepted alive Link to Nucleotide Sequence:NM_001184763.1Link to Protein Sequence:NP_001171692.1Re-query CCDS DB by Nucleotide ID:NM_001184763Re-query CCDS DB by Protein ID:NP_001171692Link to BLAST:NP_001171692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171692.1 345 Q8TAS1-3 345 100% 0 0

Chromosomal Locations for CCDS 53423.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162497251 162497296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162499955 162500247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162500913 162501104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162503754 162503848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162512500 162512576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162512725 162512823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162518102 162518190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162522404 162522550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTTTCTTACCAGACCGAAGGTCTGTGTTGACCTTAACCGGAGAGTGACTTTGTATGGAGTGTTTACAA
TC
CACTTTTCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCTGGATGTCAGTGTTTCGGAATT
G
CTCTTATATTCCAGTCACCAGGGTTGTTCCATGTGGATGATACAGCATTGTGCCCGAGATGTTTTGGAG
GCC
CTTGCTTTTCTTCATCATGAGGGCTATGTCCATGCGGACCTCAAACCACGTAACATATTGTGGAGTG
CA
GAGAATGAATGTTTTAAACTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGATGTAAAGTA
T
ATTCAGACAGACGGGTATCGGGCTCCAGAAGCAGAATTGCAAAATTGCTTGGCCCAGGCTGGCCTGCAG
AGT
GATACAGAATGTACCTCAGCTGTTGATCTGTGGAGCCTAGGAATCATTTTACTGGAAATGTTCTCAG
GA
ATGAAACTGAAACATACAGTCAGATCTCAGGAATGGAAGGCAAACAGTTCTGCTATTATTGATCACAT
A
TTTGCCAGTAAAGCAGTGGTGAATGCCGCAATTCCAGCCTATCACCTAAGAGACCTTATCAAAAGCATG
CTT
CATGATGATCCAAGCAGAAGAATTCCTGCTGAAATGGCATTGTGCAGCCCATTCTTTAGCATTCCTT
TT
GCCCCTCATATTGAAGATCTGGTCATGCTTCCCACTCCAGTGCTAAGACTGCTGAATGTGCTGGATGA
T
GATTATCTTGAGAATGAAGAGGAATATGAAGATGTTGTAGAAGATGTAAAAGAGGAGTGTCAAAAATAT
GGA
CCAGTGGTATCTCTACTTGTTCCAAAGGAAAATCCTGGCAGAGGACAAGTCTTTGTTGAGTATGCAA
AT
GCTGGTGATTCCAAAGCTGCGCAGAAATTACTGACTGGAAGGATGTTTGATGGGAAGTTTGTTGTGGC
T
ACATTCTACCCGCTGAGTGCCTACAAGAGGGGATATCTGTATCAAACCTTGCTTTAA


Translation (345 aa):
MFLTRPKVCVDLNRRVTLYGVFTIHFSPNVPSRCLLLELLDVSVSELLLYSSHQGCSMWMIQHCARDVLE
A
LAFLHHEGYVHADLKPRNILWSAENECFKLIDFGLSFKEGNQ
DVKYIQTDGYRAPEAELQNCLAQAGLQ
S
DTECTSAVDLWSLGIILLEMFSGMKLKHTVRSQEWK
ANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSM
L
HDDPSRRIPAEMALCSPFFSIPF
APHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKY
G
PVVSLLVPKENPGRGQ
VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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