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Report for CCDS9902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9902.1 Public Homo sapiens 14 CPSF2 24 110 108 CCDS HistoryNCBI Gene:53981Re-query CCDS DB by CCDS ID:9902.1Re-query CCDS DB by GeneID:53981See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9902.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298875.9 ENSP00000298875.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298875.9Link to Ensembl Protein Viewer:ENSP00000298875.4Re-query CCDS DB by Nucleotide ID:ENST00000298875Re-query CCDS DB by Protein ID:ENSP00000298875
Original member Current member NCBI NM_001322272.2 NP_001309201.1 Accepted alive Link to Nucleotide Sequence:NM_001322272.2Link to Protein Sequence:NP_001309201.1Re-query CCDS DB by Nucleotide ID:NM_001322272Re-query CCDS DB by Protein ID:NP_001309201Link to BLAST:NP_001309201.1
Original member Current member NCBI NM_017437.3 NP_059133.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017437.3Link to Protein Sequence:NP_059133.1Re-query CCDS DB by Nucleotide ID:NM_017437Re-query CCDS DB by Protein ID:NP_059133Link to BLAST:NP_059133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309201.1 782 Q9P2I0 782 100% 0 0
NP_059133.1 782 Q9P2I0 782 100% 0 0

Chromosomal Locations for CCDS 9902.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 92130985 92131133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92134011 92134170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92134250 92134355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92135367 92135496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92138232 92138347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92142164 92142351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92143004 92143294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92154358 92154458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92155123 92155323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92156479 92156631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92157659 92157884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92158983 92159282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92161112 92161246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92161652 92161744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGACGTCTATTATCAAATTAACTACCCTTTCTGGGGTCCAAGAAGAATCTGCCCTTTGCTATCTTCTCC
AAGTTGATGAGTTTAGATTTTTATTGGACTGTGGCTGGGATGAGCACTTTTCTATGGATATTATTGATTC
CCTGAGGAAGCATGTTCACCAGATTGATGCAGTGCTGTTGTCTCACCCTGATCCTCTCCACCTTGGTGCC
CTCCCGTATGCTGTCGGAAAGTTGGGTCTGAACTGTGCTATCTATGCAACCATTCCTGTTTATAAAATGG
GACAGATGTTCATGTATGATCTTTATCAGTCTCGACACAATACAGAAGATTTTACACTCTTTACATTAGA
TGATGTGGATGCAGCCTTTGATAAAATACAGCAGCTAAAATTCTCTCAGATTGTGAATTTGAAAGGTAAA
GGACATGGCCTGTCTATCACACCTCTGCCAGCTGGTCATATGATAGGTGGAACAATATGGAAAATAGTCA
AAGATGGAGAAGAAGAAATTGTTTATGCAGTTGACTTCAACCACAAGAGGGAGATCCATTTAAATGGATG
TTCCCTGGAAATGCTAAGCAGGCCTTCCCTACTTATCACAGATTCATTCAATGCTACATATGTACAGCCT
AGAAGAAAACAGAGAGATGAGCAGCTTCTGACAAATGTCCTGGAAACACTTCGAGGTGATGGAAATGTGT
TAATAGCAGTGGACACAGCAGGCAGAGTTTTGGAACTTGCTCAACTTCTTGATCAGATTTGGAGGACTAA
AGATGCAGGATTGGGTGTTTACTCATTGGCACTCCTAAATAATGTCAGTTACAATGTGGTGGAGTTTTCT
AAGTCCCAGGTAGAATGGATGAGTGATAAATTGATGAGATGTTTTGAAGACAAAAGAAATAATCCGTTTC
AGTTTCGCCATCTCTCTTTATGTCATGGTCTTTCTGACTTGGCCCGTGTACCTAGCCCTAAAGTTGTACT
TGCCAGCCAACCTGACCTGGAATGCGGATTTTCAAGGGATCTCTTTATTCAGTGGTGTCAGGACCCTAAA
AACTCAATCATTCTAACCTACAGAACTACTCCTGGGACTTTAGCACGTTTCCTAATTGATAATCCTTCTG
AAAAAATTACAGAAATAGAGTTGAGGAAACGTGTGAAGCTTGAAGGGAAAGAACTTGAAGAATACTTGGA
AAAAGAGAAACTAAAGAAAGAAGCTGCCAAAAAGCTTGAGCAGTCAAAAGAGGCAGATATAGATTCCAGT
GATGAGAGTGATATTGAGGAAGATATTGACCAGCCATCAGCTCATAAGACGAAGCATGACTTGATGATGA
AAGGTGAAGGCAGTCGTAAAGGAAGTTTTTTCAAACAGGCAAAAAAGTCCTATCCTATGTTTCCTGCCCC
AGAAGAAAGAATTAAATGGGATGAATATGGAGAGATTATCAAACCAGAGGATTTCTTAGTGCCAGAGCTT
CAAGCTACTGAAGAAGAAAAAAGCAAATTAGAATCTGGTTTGACAAATGGAGATGAACCTATGGATCAGG
ATTTATCTGATGTTCCTACTAAATGTATTTCTACAACAGAGTCTATTGAAATAAAAGCCCGGGTTACCTA
CATAGACTATGAAGGACGCTCTGATGGGGATTCCATTAAAAAAATCATTAATCAGATGAAACCACGACAG
TTGATCATCGTCCATGGCCCACCAGAGGCCAGTCAAGATCTGGCAGAGTGCTGTCGCGCCTTTGGTGGGA
AAGATATTAAAGTGTACATGCCAAAGCTACATGAAACAGTTGATGCCACTAGTGAAACTCACATCTACCA
GGTGAGGTTAAAAGACTCACTTGTCAGCTCTCTTCAGTTTTGTAAGGCAAAAGATGCTGAATTAGCTTGG
ATAGATGGTGTCTTAGATATGAGAGTTTCCAAAGTGGACACAGGGGTTATTTTAGAAGAAGGAGAACTAA
AGGATGATGGAGAAGACTCAGAGATGCAAGTGGAAGCTCCCTCAGATTCTAGCGTTATAGCACAACAAAA
GGCCATGAAAAGTCTGTTCGGAGATGATGAAAAAGAAACAGGTGAAGAAAGTGAGATCATTCCTACTTTG
GAACCCTTGCCACCTCATGAGGTTCCTGGACATCAGTCAGTTTTTATGAATGAACCAAGGCTGTCAGACT
TCAAGCAAGTTCTCTTACGGGAGGGGATTCAAGCTGAATTTGTAGGAGGTGTACTTGTTTGCAACAATCA
AGTAGCAGTCCGCAGAACGGAAACTGGACGCATTGGATTAGAAGGCTGCCTTTGTCAAGATTTTTATAGG
ATAAGAGACCTTTTATATGAACAATATGCCATTGTATAA

Translation (782 aa):
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLGA
LPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGK
GHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQP
RRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFS
KSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPK
NSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPEL
QATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQ
LIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAW
IDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTL
EPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYR
IRDLLYEQYAIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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