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Report for CCDS9626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9626.1 Public Homo sapiens 14 LTB4R 24 110 108 CCDS HistoryNCBI Gene:1241Re-query CCDS DB by CCDS ID:9626.1Re-query CCDS DB by GeneID:1241See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9626.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345363.8 ENSP00000307445.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345363.8Link to Ensembl Protein Viewer:ENSP00000307445.3Re-query CCDS DB by Nucleotide ID:ENST00000345363Re-query CCDS DB by Protein ID:ENSP00000307445
Original member Current member EBI ENST00000396782.2 ENSP00000380002.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396782.2Link to Ensembl Protein Viewer:ENSP00000380002.2Re-query CCDS DB by Nucleotide ID:ENST00000396782Re-query CCDS DB by Protein ID:ENSP00000380002
Original member Current member EBI ENST00000396789.4 ENSP00000380008.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396789.4Link to Ensembl Protein Viewer:ENSP00000380008.4Re-query CCDS DB by Nucleotide ID:ENST00000396789Re-query CCDS DB by Protein ID:ENSP00000380008
Original member Current member NCBI NM_001143919.3 NP_001137391.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143919.3Link to Protein Sequence:NP_001137391.1Re-query CCDS DB by Nucleotide ID:NM_001143919Re-query CCDS DB by Protein ID:NP_001137391Link to BLAST:NP_001137391.1
Original member Current member NCBI NM_181657.3 NP_858043.1 Accepted alive Link to Nucleotide Sequence:NM_181657.3Link to Protein Sequence:NP_858043.1Re-query CCDS DB by Nucleotide ID:NM_181657Re-query CCDS DB by Protein ID:NP_858043Link to BLAST:NP_858043.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137391.1 352 Q15722 352 100% 0 0
NP_858043.1 352 Q15722 352 100% 0 0

Chromosomal Locations for CCDS 9626.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24315652 24316710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGAACACTACATCTTCTGCAGCACCCCCCTCACTAGGTGTAGAGTTCATCTCTCTGCTGGCTATCATCC
TGCTGTCAGTGGCGCTGGCTGTGGGGCTTCCCGGCAACAGCTTTGTGGTGTGGAGTATCCTGAAAAGGAT
GCAGAAGCGCTCTGTCACTGCCCTGATGGTGCTGAACCTGGCCCTGGCCGACCTGGCCGTATTGCTCACT
GCTCCCTTTTTCCTTCACTTCCTGGCCCAAGGCACCTGGAGTTTTGGACTGGCTGGTTGCCGCCTGTGTC
ACTATGTCTGCGGAGTCAGCATGTACGCCAGCGTCCTGCTTATCACGGCCATGAGTCTAGACCGCTCACT
GGCGGTGGCCCGCCCCTTTGTGTCCCAGAAGCTACGCACCAAGGCGATGGCCCGGCGGGTGCTGGCAGGC
ATCTGGGTGTTGTCCTTTCTGCTGGCCACACCCGTCCTCGCGTACCGCACAGTAGTGCCCTGGAAAACGA
ACATGAGCCTGTGCTTCCCGCGGTACCCCAGCGAAGGGCACCGGGCCTTCCATCTAATCTTCGAGGCTGT
CACGGGCTTCCTGCTGCCCTTCCTGGCTGTGGTGGCCAGCTACTCGGACATAGGGCGTCGGCTACAGGCC
CGGCGCTTCCGCCGCAGCCGCCGCACCGGCCGCCTGGTGGTGCTCATCATCCTGACCTTCGCCGCCTTCT
GGCTGCCCTACCACGTGGTGAACCTGGCTGAGGCGGGCCGCGCGCTGGCCGGCCAGGCCGCCGGGTTAGG
GCTCGTGGGGAAGCGGCTGAGCCTGGCCCGCAACGTGCTCATCGCACTCGCCTTCCTGAGCAGCAGCGTG
AACCCCGTGCTGTACGCGTGCGCCGGCGGCGGCCTGCTGCGCTCGGCGGGCGTGGGCTTCGTCGCCAAGC
TGCTGGAGGGCACGGGCTCCGAGGCGTCCAGCACGCGCCGCGGGGGCAGCCTGGGCCAGACCGCTAGGAG
CGGCCCCGCCGCTCTGGAGCCCGGCCCTTCCGAGAGCCTCACTGCCTCCAGCCCTCTCAAGTTAAACGAA
CTGAACTAG

Translation (352 aa):
MNTTSSAAPPSLGVEFISLLAIILLSVALAVGLPGNSFVVWSILKRMQKRSVTALMVLNLALADLAVLLT
APFFLHFLAQGTWSFGLAGCRLCHYVCGVSMYASVLLITAMSLDRSLAVARPFVSQKLRTKAMARRVLAG
IWVLSFLLATPVLAYRTVVPWKTNMSLCFPRYPSEGHRAFHLIFEAVTGFLLPFLAVVASYSDIGRRLQA
RRFRRSRRTGRLVVLIILTFAAFWLPYHVVNLAEAGRALAGQAAGLGLVGKRLSLARNVLIALAFLSSSV
NPVLYACAGGGLLRSAGVGFVAKLLEGTGSEASSTRRGGSLGQTARSGPAALEPGPSESLTASSPLKLNE
LN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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