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Report for CCDS9585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9585.1 Public Homo sapiens 14 CDH24 24 110 108 CCDS HistoryNCBI Gene:64403Re-query CCDS DB by CCDS ID:9585.1Re-query CCDS DB by GeneID:64403See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 9585.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267383.5 ENSP00000267383.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000267383.5Link to Ensembl Protein Viewer:ENSP00000267383.5Re-query CCDS DB by Nucleotide ID:ENST00000267383Re-query CCDS DB by Protein ID:ENSP00000267383
Original member Current member EBI ENST00000397359.7 ENSP00000380517.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397359.7Link to Ensembl Protein Viewer:ENSP00000380517.3Re-query CCDS DB by Nucleotide ID:ENST00000397359Re-query CCDS DB by Protein ID:ENSP00000380517
Original member Current member NCBI NM_022478.4 NP_071923.2 Accepted alive Link to Nucleotide Sequence:NM_022478.4Link to Protein Sequence:NP_071923.2Re-query CCDS DB by Nucleotide ID:NM_022478Re-query CCDS DB by Protein ID:NP_071923Link to BLAST:NP_071923.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071923.2 819 Q86UP0-1 819 100% 0 0

Chromosomal Locations for CCDS 9585.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23047980 23048479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23049027 23049275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23049627 23049738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23049822 23049943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23051970 23052083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23052473 23052609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23053496 23053749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23054141 23054328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23054506 23054673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23054747 23054866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23055059 23055353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23055533 23055733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGTGGGGCCTGGTGAGGCTCCTGCTGGCCTGGCTGGGTGGCTGGGGCTGCATGGGGCGTCTGGCAGCCC
CA
GCCCGGGCCTGGGCAGGGTCCCGGGAACACCCAGGGCCTGCTCTGCTGCGGACTCGAAGGAGCTGGGT
C
TGGAACCAGTTCTTTGTCATTGAGGAATATGCTGGTCCAGAGCCTGTTCTCATTGGCAAGCTGCACTCG
GAT
GTTGACCGGGGAGAGGGCCGCACCAAGTACCTGTTGACCGGGGAGGGGGCAGGCACCGTATTTGTGA
TT
GATGAGGCCACAGGCAATATTCATGTTACCAAGAGCCTTGACCGGGAGGAAAAGGCGCAATATGTGCT
A
CTGGCCCAAGCCGTGGACCGAGCCTCCAACCGGCCCCTGGAGCCCCCATCAGAGTTCATCATCAAAGTG
CAA
GACATCAACGACAATCCACCCATTTTTCCCCTTGGGCCCTACCATGCCACCGTGCCCGAGATGTCCA
AT
GTCGGGACATCAGTGATCCAGGTGACTGCTCACGATGCTGATGACCCCAGCTATGGGAACAGTGCCAA
G
CTGGTGTACACTGTTCTGGATGGACTGCCTTTCTTCTCTGTGGACCCCCAGACTGGAGTGGTGCGTACA
GCC
ATCCCCAACATGGACCGGGAGACACAGGAGGAGTTCTTGGTGGTGATCCAGGCCAAGGACATGGGCG
GC
CACATGGGGGGGCTGTCAGGCAGCACTACGGTGACTGTCACGCTCAGCGATGTCAACGACAACCCCCC
C
AAGTTCCCACAGAGCCTATACCAGTTCTCCGTGGTGGAGACAGCTGGACCTGGCACACTGGTGGGCCGG
CTC
CGGGCCCAGGACCCAGACCTGGGGGACAACGCCCTGATGGCATACAGCATCCTGGATGGGGAGGGGT
CT
GAGGCCTTCAGCATCAGCACAGACTTGCAGGGTCGAGACGGGCTCCTCACTGTCCGCAAGCCCCTAGA
C
TTTGAGAGCCAGCGCTCCTACTCCTTCCGTGTCGAGGCCACCAACACGCTCATTGACCCAGCCTATCTG
CGG
CGAGGGCCCTTCAAGGATGTGGCCTCTGTGCGTGTGGCAGTGCAAGATGCCCCAGAGCCACCTGCCT
TC
ACCCAGGCTGCCTACCACCTGACAGTGCCTGAGAACAAGGCCCCGGGGACCCTGGTAGGCCAGATCTC
C
GCGGCTGACCTGGACTCCCCTGCCAGCCCAATCAGATACTCCATCCTCCCCCACTCAGATCCGGAGCGT
TGC
TTCTCTATCCAGCCCGAGGAAGGCACCATCCATACAGCAGCACCCCTGGATCGCGAGGCTCGCGCCT
GG
CACAACCTCACTGTGCTGGCTACAGAGCTCGGCTGGAGCTGGGGGCCAGAAAGGGGCTGGGTACCTCT
T
CTGGTTGCTGAGTGGAGTGCACCAGCAGCCCCACCCCAGAGAAGCCCTGTTGGAAGCGCTGTGGGAATC
CCC
CAAGACAGTTCTGCACAGGCCTCGCGCGTGCAAGTGGCCATCCAGACCCTGGATGAGAATGACAATG
CT
CCCCAGCTGGCTGAGCCCTACGATACTTTTGTGTGTGACTCTGCAGCTCCTGGCCAGCTGATTCAGGT
C
ATCCGGGCCCTGGACAGAGATGAAGTTGGCAACAGTAGCCATGTCTCCTTTCAAGGTCCTCTGGGCCCT
GAT
GCCAACTTTACTGTCCAGGACAACCGAGATGGCTCCGCCAGCCTGCTGCTGCCCTCCCGCCCTGCTC
CA
CCCCGCCATGCCCCCTACTTGGTTCCCATAGAACTGTGGGACTGGGGGCAGCCGGCGCTGAGCAGCAC
T
GCCACAGTGACTGTTAGTGTGTGCCGCTGCCAGCCTGACGGCTCTGTGGCATCCTGCTGGCCTGAGGCT
CAC
CTCTCAGCTGCTGGGCTCAGCACCGGCGCCCTGCTTGCCATCATCACCTGTGTGGGTGCCCTGCTTG
CC
CTGGTGGTGCTCTTCGTGGCCCTGCGGCGGCAGAAGCAAGAAGCACTGATGGTACTGGAGGAGGAGGA
C
GTCCGAGAGAACATCATCACCTACGACGACGAGGGCGGCGGCGAGGAGGACACCGAGGCCTTCGACATC
ACG
GCCTTGCAGAACCCGGACGGGGCGGCCCCCCCGGCGCCCGGCCCTCCCGCGCGCCGAGACGTGTTGC
CC
CGGGCCCGGGTGTCGCGCCAGCCCAGACCCCCCGGCCCCGCCGACGTGGCGCAGCTCCTGGCGCTGCG
G
CTCCGCGAGGCGGACGAGGACCCCGGCGTACCCCCGTACGACTCGGTGCAGGTGTACGGCTACGAGGGC
CGC
GGCTCCTCTTGCGGCTCCCTCAGCTCCCTGGGCTCCGGCAGCGAAGCCGGCGGCGCCCCCGGCCCCG
CG
GAGCCGCTGGACGACTGGGGTCCGCTCTTCCGCACCCTGGCCGAGCTGTATGGGGCCAAGGAGCCCCC
G
GCCCCCTGA


Translation (819 aa):
MWGLVRLLLAWLGGWGCMGRLAAPARAWAGSREHPGPALLRTRRSWVWNQFFVIEEYAGPEPVLIGKLHS
D
VDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKV
Q
DINDNPPIFPLGPYHATVPEMSNV
GTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRT
A
IPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQ
SLYQFSVVETAGPGTLVGR
L
RAQDPDLGDNALMAYSILDGEGSEAFSISTDLQGRDGLLTVRK
PLDFESQRSYSFRVEATNTLIDPAYL
R
RGPFKDVASVRVAVQDAPEPPAFTQAAYHLTVPENKAPGTLVGQISAADLDSPASPI
RYSILPHSDPER
C
FSIQPEEGTIHTAAPLDREARAWHNLTVLATEL
GWSWGPERGWVPLLVAEWSAPAAPPQRSPVGSAVGI
P
Q
DSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSSHVSFQGPLGP
D
ANFTVQDNR
DGSASLLLPSRPAPPRHAPYLVPIELWDWGQPALSSTATVTVSVCRCQPDGSVASCWPEA
H
LSAAGLSTGALLAIITCVGALL
ALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDI
T
ALQNPDGAAPPAPGPPARRDVLPRARVSRQPRPPGPADVAQLLALRLREADEDPGVPPYDSVQVYGYEG
R
GSSCGSLSSLGSGSEAGGAPGPAEPLDDWGPLFRTLAELYGAKEPPAP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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