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Report for CCDS9438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9438.1 Public Homo sapiens 13 PCDH8 24 110 108 CCDS HistoryNCBI Gene:5100Re-query CCDS DB by CCDS ID:9438.1Re-query CCDS DB by GeneID:5100See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377942.7 ENSP00000367177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377942.7Link to Ensembl Protein Viewer:ENSP00000367177.3Re-query CCDS DB by Nucleotide ID:ENST00000377942Re-query CCDS DB by Protein ID:ENSP00000367177
Original member Current member NCBI NM_002590.4 NP_002581.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002590.4Link to Protein Sequence:NP_002581.2Re-query CCDS DB by Nucleotide ID:NM_002590Re-query CCDS DB by Protein ID:NP_002581Link to BLAST:NP_002581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002581.2 1070 O95206-1 1070 100% 0 0

Chromosomal Locations for CCDS 9438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52844560 52844933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52845425 52845632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52845806 52848436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGAGTCCTGTGAGGCGTTGGGGCAGCCCCTGCCTTTTCCCCTTGCAGCTCTTCAGCCTCTGCTGGGTGC
TC
TCAGTGGCCCAGAGCAAAACAGTCCGATACAGCACCTTCGAGGAGGATGCCCCCGGCACGGTCATCGG
G
ACCCTGGCCGAGGACCTGCATATGAAAGTATCGGGTGACACAAGCTTCCGCCTGATGAAGCAATTCAAC
AGC
TCTCTGCTCCGGGTGCGCGAAGGCGACGGGCAGCTGACCGTCGGGGACGCCGGCCTGGACCGCGAGC
GG
CTGTGTGGCCAGGCCCCGCAGTGCGTGCTGGCCTTCGATGTGGTCAGCTTCTCGCAGGAGCAGTTCCG
G
CTGGTGCACGTGGAGGTAGAGGTGAGGGACGTCAACGACCACGCGCCGCGCTTCCCCAGGGCCCAGATC
CCG
GTAGAGGTGTCCGAGGGTGCGGCAGTGGGCACGCGCATCCCCTTGGAGGTGCCGGTGGACGAGGACG
TG
GGCGCCAACGGGCTGCAGACCGTGCGCCTGGCCGAGCCGCACAGCCCCTTTCGCGTGGAGCTGCAGAC
G
CGAGCGGACGGCGCTCAGTGCGCAGACCTGGTGCTGCTGCAGGAGCTGGACCGCGAGAGCCAGGCCGCC
TAC
AGCCTGGAGCTGGTGGCCCAGGACGGCGGCCGCCCGCCGCGCTCCGCCACGGCTGCCCTCAGCGTGC
GC
GTCCTGGATGCGAATGACCACAGCCCGGCCTTCCCGCAGGGCGCCGTGGCCGAAGTGGAGCTGGCGGA
A
GACGCGCCCGTGGGCTCCCTGCTTCTCGACCTGGACGCAGCCGACCCCGACGAGGGACCTAACGGCGAC
GTG
GTGTTCGCATTTGGCGCCCGCACCCCGCCGGAGGCGCGCCGCCTCTTTCGGCTTGACCCGCGATCAG
GC
CGCCTCACCCTGGCCGGGCCCGTGGACTACGAGCGTCAGGACACCTACGAGCTGGACGTGCGGGCGCA
G
GACCGCGGACCCGGGCCCCGCGCTGCCACCTGCAAGGTCATCGTGCGCATCCGAGACGTCAATGACAAC
GCA
CCCGACATCGCCATCACCCCGCTGGCCGCCCCAGGCGCGCCGGCAACCTCACCCTTCGCCGCTGCCG
CC
GCCGCCGCTGCACTCGGGGGAGCGGACGCTAGCTCGCCGGCGGGAGCCGGGACGCCGGAGGCTGGTGC
C
ACTTCGCTGGTGCCGGAGGGGGCGGCGCGCGAGAGCCTGGTGGCCCTGGTCAGCACCTCGGACAGGGAC
TCG
GGCGCCAACGGGCAAGTGCGCTGCGCCCTCTATGGGCACGAGCACTTCCGGCTGCAGCCGGCCTACG
CG
GGCAGCTACCTGGTGGTGACCGCGGCGTCGCTGGACCGCGAACGCATCGCCGAGTACAACTTGACGCT
G
GTGGCCGAGGATCGCGGCGCGCCCCCGCTGCGCACAGTGCGGCCCTACACGGTGCGTGTGGGCGACGAG
AAC
GACAACGCGCCGCTCTTCACGCGGCCGGTCTATGAGGTGTCGGTGCGCGAGAACAACCCGCCAGGCG
CC
TACCTGGCCACGGTGGCCGCCCGCGACCGGGACCTGGGCCGCAACGGCCAGGTCACCTACCGGCTGCT
G
GAGGCCGAGGTGGGCCGCGCCGGGGGCGCCGTGTCCACTTATGTCTCGGTGGACCCAGCTACCGGAGCC
ATC
TACGCGCTGCGCAGCTTCGACTATGAGACGCTGCGCCAACTCGACGTTCGCATCCAAGCTAGCGACG
GC
GGCTCCCCTCAGCTTTCCAGCAGCGCCCTAGTGCAAGTGCGCGTGCTGGACCAGAACGACCATGCGCC
A
GTCCTGGTGCACCCGGCGCCAGCCAATGGCTCCCTAGAAGTGGCGGTGCCTGGGCGCACCGCAAAGGAC
ACG
GTTGTGGCCCGTGTGCAGGCCCGGGATGCAGACGAGGGAGCCAACGGGGAGCTGGCGTTCGAGCTGC
AG
CAGCAGGAGCCGCGCGAAGCCTTCGCCATCGGCCGCCGCACGGGGGAGATACTGCTCACCGGCGACCT
C
TCGCAGGAGCCACCCGGTCGCGTGTTCAGGGCGCTCCTGGTCATATCCGACGGCGGCCGTCCCCCGCTC
ACC
ACCACCGCAACTGTCAGCTTCGTGGTAACAGCAGGGGGCGGGCGTGGGCCGGCTGCGCCTGCCAGTG
CA
GGAAGCCCGGAGCGTTCCCGCCCGCCTGGCTCTCGGCTCGGGGTGTCCGGGTCGGTGCTGCAATGGGA
C
ACGCCGCTGATCGTCATCATCGTGCTGGCCGGGAGCTGCACGCTGCTGCTGGCCGCCATCATCGCCATC
GCC
ACCACCTGCAACCGCCGCAAGAAGGAGGTGCGCAAAGGGGGGGCCCTCCGGGAAGAGCGGCCCGGGG
CG
GCGGGCGGCGGAGCCTCGGCTCCCGGCTCCCCGGAGGAGGCCGCCCGGGGAGCCGGGCCCAGGCCCAA
C
ATGTTCGACGTGCTCACCTTCCCTGGCACCGGCAAAGCGCCCTTTGGCAGCCCCGCGGCGGACGCGCCT
CCG
CCTGCGGTCGCCGCGGCCGAAGTGCCGGGCTCAGAGGGCGGCAGCGCCACTGGGGAAAGCGCCTGTC
AC
TTCGAGGGGCAGCAGCGGCTCCGCGGCGCGCACGCCGAGCCCTACGGTGCCTCCCCGGGTTTTGGAAA
G
GAGCCGGCGCCCCCTGTGGCGGTGTGGAAAGGACACTCCTTCAACACCATTTCTGGCAGAGAAGCAGAG
AAG
TTCAGCGGCAAAGACAGCGGTAAAGGGGACAGTGATTTCAACGACAGCGATTCCGACATCAGCGGGG
AC
GCTCTGAAAAAGGATCTCATCAACCACATGCAGAGTGGACTGTGGGCGTGCACCGCTGAGTGTAAGAT
C
CTGGGCCACTCTGACCGCTGCTGGAGCCCATCCTGCAGCGGGCCCAACGCACATCCATCGCCTCACCCA
CCA
GCCCAGATGTCAACCTTCTGTAAGAGCACGTCACTGCCTCGGGATCCTCTGCGCAGGGACAATTACT
AC
CAGGCCCAGCTGCCCAAGACAGTGGGGCTGCAGAGCGTCTATGAGAAAGTACTGCACAGAGACTATGA
C
AGGACAGTCACTCTGCTCTCCCCTCCCCGTCCAGGGAGGCTCCCAGACCTGCAGGAGATTGGAGTACCC
CTC
TACCAGTCCCCTCCTGGCAGGTACCTGTCCCCGAAGAAGGGAGCCAATGAAAATGTGTAA


Translation (1070 aa):
MSPVRRWGSPCLFPLQLFSLCWVLSVAQSKTVRYSTFEEDAPGTVIGTLAEDLHMKVSGDTSFRLMKQFN
S
SLLRVREGDGQLTVGDAGLDRERLCGQAPQCVLAFDVVSFSQEQFRLVHVEVEVRDVNDHAPRFPRAQI
P
VEVSEGAAVGTRIPLEVPVDEDVGANGLQTVRLAEPHSPFRVELQTRADGAQCADLVLLQELDRESQAA
Y
SLELVAQDGGRPPRSATAALSVRVLDANDHSPAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEGPNGD
V
VFAFGARTPPEARRLFRLDPRSGRLTLAGPVDYERQDTYELDVRAQDRGPGPRAATCKVIVRIRDVNDN
A
PDIAITPLAAPGAPATSPFAAAAAAAALGGADASSPAGAGTPEAGATSLVPEGAARESLVALVSTSDRD
S
GANGQVRCALYGHEHFRLQPAYAGSYLVVTAASLDRERIAEYNLTLVAEDRGAPPLRTVRPYTVRVGDE
N
DNAPLFTRPVYEVSVRENNPPGAYLATVAARDRDLGRNGQVTYRLLEAEVGRAGGAVSTYVSVDPATGA
I
YALRSFDYETLRQLDVRIQASDGGSPQLSSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVPGRTAKD
T
VVARVQARDADEGANGELAFELQQQEPREAFAIGRRTGEILLTGDLSQEPPGRVFRALLVISDGGRPPL
T
TTATVSFVVTAGGGRGPAAPASAGSPERSRPPGSRLGVSGSVLQWDTPLIVIIVLAGSCTLLLAAIIAI
A
TTCNRRKKEVRKGGALREERPGAAGGGASAPGSPEEAARGAGPRPNMFDVLTFPGTGKAPFGSPAADAP
P
PAVAAAEVPGSEGGSATGESACHFEGQQRLRGAHAE
PYGASPGFGKEPAPPVAVWKGHSFNTISGREAE
K
FSGKDSGKGDSDFNDSDSDISGDALKKDLINHMQS
GLWACTAECKILGHSDRCWSPSCSGPNAHPSPHP
P
AQMSTFCKSTSLPRDPLRRDNYYQAQLPKTVGLQSVYEKVLHRDYDRTVTLLSPPRPGRLPDLQEIGVP
L
YQSPPGRYLSPKKGANENV




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