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Report for CCDS9390.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9390.2 Public Homo sapiens 13 CCDC122 24 110 108 CCDS HistoryNCBI Gene:160857Re-query CCDS DB by CCDS ID:9390.2Re-query CCDS DB by GeneID:160857See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9390.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444614.8 ENSP00000407763.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444614.8Link to Ensembl Protein Viewer:ENSP00000407763.2Re-query CCDS DB by Nucleotide ID:ENST00000444614Re-query CCDS DB by Protein ID:ENSP00000407763
Original member Current member NCBI NM_144974.5 NP_659411.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144974.5Link to Protein Sequence:NP_659411.2Re-query CCDS DB by Nucleotide ID:NM_144974Re-query CCDS DB by Protein ID:NP_659411Link to BLAST:NP_659411.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659411.2 273 Q5T0U0-1 273 100% 0 0

Chromosomal Locations for CCDS 9390.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43837280 43837429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43858781 43858897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43859672 43860070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43868694 43868803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43869331 43869376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGTCAGACAACAAAGAAAGGAAGAGTCAAGGATTTCCTAAAGAAGATAACCAAGACACAAGTTCATTAG
CTGATGCTGTAGAGAAAGTTGCAAAGCAACAACAATCACAAGCATCAGAGATAGAAAAAAACAAAAAGGT
TCTGTTCAATTTGAAGAATGAACTTCATGAGCTTGAAAAAGAAATAGCAGCTATCTCTGCAGAAACTAAA
GAAACAGAAAGACAAATTTATCAACAAGATTCTGCCATAGAGAATACCAAACTTCATTGTGATAGCCTGG
AAACTCAAATCAAATCCTTACATTCAGAAAATGTAAAGCTTAAATTTGACATAGAAACAGCCCAAGAAGA
TTTTGAGGAACACATGATAAAATATAATGCATATTATGCAAAAATAAAAGCACATAAAAATAGTTTGGGG
GAAGTAGAGAGCAAATGGTCATTTATGACTGAACTCCATGAAAAGCGAGATTTTGTTAAAAAATTAAAGA
CAATGAAAGAAGAACTTATGCAAGATCTTCAAAATCCAGGAGGGAACCGAATAACACAAGTACAGGAAGA
CATTACAAACTTAAAGGATAAAATTATAACTGTAAAAGAATCTATCATTGAAAAAACTTGTTTTCTTGAG
GAAGAAAAAAAGACACATGAAAAATTAAGAAAAGAAATAGAGGTACAACATAAGAGGTATGATGCAATTC
TTAAGCGTTTGCATTGTCAGGTGAACAAGCTTCAGTCAAATAGACGACAGTGGCAATGGAACATTCAACA
ATTGGAAAAAACTGCAGCCGAATTAAGAAAATGCATTGGAATGCAAGAGTAA

Translation (273 aa):
MSDNKERKSQGFPKEDNQDTSSLADAVEKVAKQQQSQASEIEKNKKVLFNLKNELHELEKEIAAISAETK
ETERQIYQQDSAIENTKLHCDSLETQIKSLHSENVKLKFDIETAQEDFEEHMIKYNAYYAKIKAHKNSLG
EVESKWSFMTELHEKRDFVKKLKTMKEELMQDLQNPGGNRITQVQEDITNLKDKIITVKESIIEKTCFLE
EEKKTHEKLRKEIEVQHKRYDAILKRLHCQVNKLQSNRRQWQWNIQQLEKTAAELRKCIGMQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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