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Report for CCDS93613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93613.1 Public Homo sapiens 4 SYNPO2 24 110 108 CCDS HistoryNCBI Gene:171024Re-query CCDS DB by CCDS ID:93613.1Re-query CCDS DB by GeneID:171024See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000627783.2 ENSP00000498985.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000627783.2Link to Ensembl Protein Viewer:ENSP00000498985.1Re-query CCDS DB by Nucleotide ID:ENST00000627783Re-query CCDS DB by Protein ID:ENSP00000498985
Original member Current member NCBI NM_001389264.1 NP_001376193.1 Accepted alive Link to Nucleotide Sequence:NM_001389264.1Link to Protein Sequence:NP_001376193.1Re-query CCDS DB by Nucleotide ID:NM_001389264Re-query CCDS DB by Protein ID:NP_001376193Link to BLAST:NP_001376193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001376193.1 698 Q9UMS6-5 698 100% 0 0

Chromosomal Locations for CCDS 93613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119029961 119032057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGTTTAAGAAGCGACGTCGGAGGGCCAGGAAATACACCCTAGTTAGCTACGGTACTGGCGAGCTTGAGC
GAGAGGCGGACGAGGAGGAAGAAGGTGACAAGGAGGATACATGTGAAGTAGCATTTCTTGGTGCAAGCGA
ATCAGAGGTGGATGAAGAGTTATTGTCTGACGTTGACGACAACACACAAGTTGTGAACTTTGACTGGGAT
TCTGGACTGGTGGACATTGAAAAGAAACTGAACAGAGGGGACAAGATGGAGATGTTACCAGACACCACAG
GCAAGGGAGCCCTCATGTTTGCCAAGAGGAGGGAGAGAATGGATCAGATCACAGCCCAAAAAGAAGAGGA
CAAGGTAGGTGGAACGCCAAGCAGAGAACAAGATGCTGCCCAGACCGATGGCCTGAGAACCACGACTTCT
TACCAAAGAAAGGAGGAAGAGTCGGTAAGAACGCAGAGCTCTGTGAGCAAAAGCTACATCGAGGTGAGTC
ATGGTCTTGGCCATGTTCCCCAACAGAATGGCTTCAGTGGGACATCTGAGACAGCAAACATCCAGAGGAT
GGTCCCCATGAATAGAACGGCCAAACCCTTCCCAGGGTCTGTGAATCAGCCAGCTACCCCCTTCTCGCCA
ACCCGAAACATGACGAGTCCCATTGCTGACTTTCCTGCACCTCCACCTTACTCTGCAGTCACTCCTCCCC
CTGACGCCTTCTCCAGAGGGGTTTCAAGTCCGATTGCTGGCCCAGCACAGCCCCCTCCATGGCCCCAGCC
TGCCCCGTGGTCCCAGCCAGCCTTTTACGATTCGTCTGAGCGAATAGCTTCCCGAGATGAGAGGATCTCA
GTGCCAGCAAAAAGAACAGGAATATTGCAGGAGGCCAAAAGGAGAAGCACGACAAAACCCATGTTTACTT
TTAAAGAGCCCAAAGTAAGCCCAAATCCTGAACTCTTGTCACTCCTTCAAAATTCAGAAGGCAAACGGGG
CACTGGAGCTGGAGGTGATTCCGGACCGGAAGAAGACTACCTCAGCTTGGGGGCAGAGGCTTGTAATTTC
ATGCAAAGCTCCTCTGCCAAACAAAAGACCCCTCCTCCTGTTGCTCCAAAACCTGCAGTCAAGTCCTCAT
CCTCCCAACCAGTAACTCCAGTTTCCCCAGTCTGGTCTCCAGGAGTGGCTCCCACCCAACCTCCTGCCTT
CCCCACATCCAACCCATCAAAGGGCACCGTTGTCTCCTCCATCAAAATAGCCCAGCCTTCTTACCCTCCT
GCCCGGCCTGCAAGTACTTTGAACGTGGCTGGTCCCTTCAAAGGACCACAAGCAGCAGTAGCCAGTCAGA
ATTACACACCCAAACCAACAGTTTCCACACCAACAGTCAATGCTGTTCAGCCTGGTGCAGTGGGACCATC
CAATGAGCTTCCAGGAATGAGTGGGAGAGGAGCTCAGCTCTTTGCTAAAAGGCAGTCGAGAATGGAGAAG
TATGTGGTCGATTCAGACACGGTGCAGGCCCACGCTGCTCGAGCTCAGTCTCCCACTCCATCTCTCCCGG
CCAGTTGGAAGTACTCCTCCAATGTCCGAGCACCTCCTCCTGTGGCCTATAATCCTATCCACTCGCCGTC
TTACCCACTGGCTGCTCTCAAGTCTCAGCCATCAGCTGCACAGCCCTCCAAAATGGGCAAGAAAAAGGGA
AAGAAACCCCTCAATGCATTAGATGTCATGAAGCACCAACCGTATCAGCTCAATGCATCCTTGTTTACTT
TCCAACCTCCAGATGCAAAGGATGGCCTCCCCCAGAAGTCATCAGTCAAGGTCAATTCAGCCCTGGCCAT
GAAGCAAGCTCTTCCTCCCCGGCCAGTGAATGCTGCCTCACCTACGAATGTGCAGGCTTCGTCAGTGTAC
TCGGTACCAGCCTATACCTCTCCTCCTTCCTTCTTTGCAGAGGCCTCCTCACCAGTCAGTGCATCCCCAG
TGCCTGTGGGCATTCCCACCTCGCCAAAGCAAGAATCAGCCTCATCATCTTATTTTGTGGCACCAAGGCC
AAAGTTCTCAGCCAAGAAAAGTGGTGTCACAATTCAGGTGTGGAAACCATCTGTTGTGGAAGAGTAA

Translation (698 aa):
MFKKRRRRARKYTLVSYGTGELEREADEEEEGDKEDTCEVAFLGASESEVDEELLSDVDDNTQVVNFDWD
SGLVDIEKKLNRGDKMEMLPDTTGKGALMFAKRRERMDQITAQKEEDKVGGTPSREQDAAQTDGLRTTTS
YQRKEEESVRTQSSVSKSYIEVSHGLGHVPQQNGFSGTSETANIQRMVPMNRTAKPFPGSVNQPATPFSP
TRNMTSPIADFPAPPPYSAVTPPPDAFSRGVSSPIAGPAQPPPWPQPAPWSQPAFYDSSERIASRDERIS
VPAKRTGILQEAKRRSTTKPMFTFKEPKVSPNPELLSLLQNSEGKRGTGAGGDSGPEEDYLSLGAEACNF
MQSSSAKQKTPPPVAPKPAVKSSSSQPVTPVSPVWSPGVAPTQPPAFPTSNPSKGTVVSSIKIAQPSYPP
ARPASTLNVAGPFKGPQAAVASQNYTPKPTVSTPTVNAVQPGAVGPSNELPGMSGRGAQLFAKRQSRMEK
YVVDSDTVQAHAARAQSPTPSLPASWKYSSNVRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSKMGKKKG
KKPLNALDVMKHQPYQLNASLFTFQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVY
SVPAYTSPPSFFAEASSPVSASPVPVGIPTSPKQESASSSYFVAPRPKFSAKKSGVTIQVWKPSVVEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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