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Report for CCDS9357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9357.1 Under review, withdrawal Homo sapiens 13 CCNA1 24 110 108 CCDS HistoryNCBI Gene:8900Re-query CCDS DB by CCDS ID:9357.1Re-query CCDS DB by GeneID:8900See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255465.7 ENSP00000255465.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255465.7Link to Ensembl Protein Viewer:ENSP00000255465.4Re-query CCDS DB by Nucleotide ID:ENST00000255465Re-query CCDS DB by Protein ID:ENSP00000255465
Original member NCBI NM_003914.4 NP_003905.1 MANE Select Removed not alive Link to Nucleotide Sequence:NM_003914.4Link to Protein Sequence:NP_003905.1Re-query CCDS DB by Nucleotide ID:NM_003914Re-query CCDS DB by Protein ID:NP_003905Link to BLAST:NP_003905.1

Chromosomal Locations for CCDS 9357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36432622 36432729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36433033 36433221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36437629 36437875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36438067 36438191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36438644 36438867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36439979 36440183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36441118 36441231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36442171 36442304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36442614 36442665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGAGACCGGCTTTCCCGCAATCATGTACCCTGGATCTTTTATTGGGGGCTGGGGAGAAGAGTATCTCA
GC
TGGGAAGGACCGGGGCTCCCAGATTTCGTCTTCCAGCAGCAGCCCGTGGAGTCTGAAGCAATGCACTG
C
AGCAACCCCAAGAGTGGAGTTGTGCTGGCTACAGTGGCCCGAGGTCCCGATGCTTGTCAGATACTCACC
AGA
GCCCCGCTGGGCCAGGATCCCCCGCAGAGGACAGTGCTAGGGCTGCTAACTGCAAATGGGCAGTACA
GG
AGGACCTGTGGCCAGGGGATCACAAGAATCAGGTGTTATTCTGGATCAGAAAATGCCTTCCCTCCAGC
T
GGAAAGAAAGCACTCCCTGACTGTGGGGTCCAAGAGCCCCCCAAGCAAGGGTTTGACATCTACATGGAT
GAA
CTAGAGCAGGGGGACAGAGACAGCTGCTCGGTCAGAGAGGGGATGGCATTTGAGGATGTGTATGAAG
TA
GACACCGGCACACTCAAGTCAGACCTGCACTTCCTGCTGGATTTCAACACAGTTTCCCCTATGCTGGT
A
GATTCATCTCTCCTCTCCCAGTCTGAAGATATATCCAGTCTTGGCACAGATGTGATAAATGTGACTGAA
TAT
GCTGAAGAAATTTATCAGTACCTTAGGGAAGCTGAAATAAGGCACAGACCCAAAGCACACTACATGA
AG
AAGCAGCCAGACATCACGGAAGGCATGCGCACGATTCTGGTGGACTGGCTGGTGGAGGTTGGGGAAGA
A
TATAAACTTCGAGCAGAGACCCTGTATCTGGCTGTCAACTTCCTGGACAGGTTCCTTTCATGTATGTCT
GTT
CTGAGAGGGAAACTGCAGCTCGTAGGAACAGCAGCTATGCTTTTGGCTTCGAAATATGAAGAGATAT
AT
CCTCCTGAAGTAGACGAGTTTGTCTATATCACCGATGATACATACACAAAACGACAACTGTTAAAAAT
G
GAACACTTGCTTCTGAAAGTTCTAGCTTTTGATCTGACAGTACCAACCACCAACCAGTTTCTCCTTCAG
TAC
TTGAGGCGACAAGGAGTGTGCGTCAGGACTGAGAACCTGGCTAAGTACGTAGCAGAGCTGAGTCTAC
TT
GAAGCAGATCCATTCTTGAAATATCTTCCTTCACTGATAGCTGCAGCAGCTTTTTGCCTGGCAAACTA
T
ACTGTGAACAAGCACTTTTGGCCAGAAACCCTTGCTGCATTTACAGGGTATTCATTAAGTGAAATTGTG
CCT
TGCCTGAGTGAGCTTCATAAAGCGTACCTTGATATACCCCATCGACCTCAGCAAGCAATTAGGGAGA
AG
TACAAGGCTTCAAAGTACCTGTGTGTGTCCCTCATGGAGCCACCTGCAGTTCTTCTTCTACAATAA


Translation (465 aa):
METGFPAIMYPGSFIGGWGEEYLSWEGPGLPDFVFQQQPVESEAMHCSNPKSGVVLATVARGPDACQILT
R
APLGQDPPQRTVLGLLTANGQYRRTCGQ
GITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQGFDIYMD
E
LEQGDRDSCSVREGMAFEDVYEVDTGTLKSDLHFLLDFNT
VSPMLVDSSLLSQSEDISSLGTDVINVTE
Y
AEEIYQYLREAE
IRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCMS
V
LRGKLQLVGTAAMLLA
SKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQ
Y
LRRQGVCVRTENLAK
YVAELSLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAAFTGYSLSEIV
P
CLSELHKAYLDIPHRPQQAIREKYKAS
KYLCVSLMEPPAVLLLQ



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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