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Report for CCDS89547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89547.1 Public Mus musculus 2 Frmd5 23 108 98 CCDS HistoryNCBI Gene:228564Re-query CCDS DB by CCDS ID:89547.1Re-query CCDS DB by GeneID:228564See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110592.1 ENSMUSP00000106222.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110592.1Link to Ensembl Protein Viewer:ENSMUSP00000106222.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110592Re-query CCDS DB by Protein ID:ENSMUSP00000106222
Original member Current member NCBI NM_001360084.1 NP_001347013.1 Accepted alive Link to Nucleotide Sequence:NM_001360084.1Link to Protein Sequence:NP_001347013.1Re-query CCDS DB by Nucleotide ID:NM_001360084Re-query CCDS DB by Protein ID:NP_001347013Link to BLAST:NP_001347013.1

Chromosomal Locations for CCDS 89547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121548655 121549232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121553338 121553444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121554265 121554333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121555570 121555644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121557317 121557408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121557824 121557887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121562885 121562973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121568893 121568980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121573545 121573668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121576322 121576419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121585906 121585984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121586429 121586471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121591658 121591762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121806730 121806831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGCTGAGCAGGTTGATGAGCGGCAGCAGCAGGAGTCTGGAGCGCGAGTACAGCTGCACCGTGCGGCTGC
TG
GACGACAGCGAGTACACCTGCACCATCCAGAGAGATGCCAAAGGCCAGTACCTGTTTGACCTCCTTTG
C
CACCACCTGAACCTACTTGAGAAAGACTACTTTGGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT
TGG
TTGGAGTTTACAAAGTCAGTGGTGAAGCAGCTGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG
TG
AAGTTTTACCCTGCCGACCCCGCTGCCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCCTTCAGAT
C
AAAAGGGATCTCTACCACGGCCGTCTTCTCTGTAAAACATCGGATGCCGCCTTGTTAGCGGCCTATATC
CTT
CAAGCGGAGATTGGGGATTATGACCCGGGAAAGCACCCTGAAGGCTACAGCTCCAAGTTCCAATTTT
TC
CCGAAACATTCAGAGAAACTGGAAAAGAAAATTGCTGAGATTCACAAGACCGAACTCAGTGGTCAAAC
A
CCAGCAACATCAGAGCTGAATTTCTTAAGAAAGGCCCAGACGTTAGAGACCTACGGAGTGGACCCTCAC
CCA
TGTAAGGATGTGTCGGGAAATGCTGCGTTTCTGGCCTTCACTCCTTTCGGGTTTGTTGTTCTTCAAG
GA
AACAAGAGGGTCCACTTCATTAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGGAAAGACTTTCTA
T
TTATATGTAAGTCAGAAAGAGGAAAAAAAGATTATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC
AAG
CACCTCTGGAAATGTGGAATTGAGAACCAAGCCTTCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCA
CA
GTGTCCAGCAGCAATTTGTTCTTTAAGGGGAGCCGGTTCCGATACAGTGGCCGGGTCGCAAAGGAAGT
A
ATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGGGATGGTCCCTAGCCGC
AGC
TGTCCTTCTATAACCCATGGCCCACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAGCTGTGCACA
TC
TCTATCATGGAAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCCCA
T
GGGGACACCTTCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAGCG
GAT
GAGGCCTACAGCCCCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGATGC
TG
CTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAAGGAGTCGGAGGCCAGCACCCC
G
ACTGCGACAGAGGCGGAGGCCCTGGGAGGAGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTCAGAG
CAA
GAACAGGTGAATAAGTTTGTTTTAAGTGTTCTCCGTTTGCTCCTTGTGACCATGGGACTCCTCTTTG
TT
TTGCTCCTCCTCCTGATCATCCTTACTGAGTCTGACCTTGACGTTGCTTTTTTCCGAGATATCCGCCA
G
ACCCCCGAGTTTGAACAATTCCACTATCAATACTTTTGTCCCCTCAGGCGATGGTTTGCCTGCAAAATC
CGC
TCAGTGGTGAGCCTGCTCATTGACACCTGA


Translation (570 aa):
MLSRLMSGSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFDLLCHHLNLLEKDYFGIRFVDPDKQRH
W
LEFTKSVVKQLR
SQPPFTMCFRVKFYPADPAALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYI
L
Q
AEIGDYDPGKHPEGYSSKFQFFPKHSEKLEKKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPH
P
CK
DVSGNAAFLAFTPFGFVVLQGNKRVHFIKWNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEAC
K
HLWKCGIENQAFY
KLEKSSQVRTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSR
S
CPSITHGPRLSSVPRTRRRAVHISIME
GLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVAVIA
D
EAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTATEAEALGGELRALCQGHGGSE
Q
EQVNKFVLSVLRLLLVTMGLLFVLLLLLIILTESDLDVAFFRDIRQTPEFEQFHYQYFCPLRRWFACKI
R
SVVSLLIDT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser