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Report for CCDS89477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89477.1 Public Mus musculus 2 Mapkap1 23 108 98 CCDS HistoryNCBI Gene:227743Re-query CCDS DB by CCDS ID:89477.1Re-query CCDS DB by GeneID:227743See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113124.7 ENSMUSP00000108749.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113124.7Link to Ensembl Protein Viewer:ENSMUSP00000108749.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113124Re-query CCDS DB by Protein ID:ENSMUSP00000108749
Original member Current member NCBI NM_001362921.1 NP_001349850.1 Accepted alive Link to Nucleotide Sequence:NM_001362921.1Link to Protein Sequence:NP_001349850.1Re-query CCDS DB by Nucleotide ID:NM_001362921Re-query CCDS DB by Protein ID:NP_001349850Link to BLAST:NP_001349850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349850.1 486 Q8BKH7-2 486 100% 0 0

Chromosomal Locations for CCDS 89477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34432072 34432330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34435133 34435222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34444258 34444406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34497701 34497873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34518673 34518849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34533788 34533897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34581192 34581332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34597423 34597560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34619845 34619942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34623423 34623548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACACGTGACCAGTGATGACA
CA
GGAATGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCC
T
GGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAGTCTGTT
GAT
ATTACATCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAGCTCAAAGATTAGAACGACTCC
GC
AAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAACAATCAGC
C
CAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAGCCTCCAAGTTCAGGCAAGCAGTCC
ATA
TTGTCTGTACGCCTGGAGCAGTGCCCTCTGCAGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTG
AT
GGCAAGGGTCATGTGGGTACAACTGCAACTAAGAAGATCGACGTCTACCTCCCCCTGCACTCCAGCCA
G
GACAGACTGCTGCCAATGACCGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATC
TGT
TGGCAGTACACGAGTGAAGGACGGGAGCCGAAGCTCAATGACAATGTCAGTGCCTACTGCCTGCATA
TT
GCTGAGGATGATGGGGAGGTCGACACGGATTTTCCGCCACTGGATTCCAATGAGCCCATTCATAAGTT
T
GGCTTCAGTACTTTGGCCCTGGTTGAAAAATACTCCTCTCCTGGTCTGACCTCCAAAGAGTCGCTCTTT
GTT
CGAATAAATGCTGCTCATGGATTCTCCCTTATCCAAGTAGACAACACAAAGGTCACCATGAAGGAGA
TC
TTGCTCAAGGCAGTGAAAAGAAGAAAAGGATCCCAGAAAATTTCAGGTTCAAGGGCAGACGGAGTTTT
C
GAGGAGGATTCACAAATTGACATCGCTACAGTACAGGATATGCTTAGCAGCCACCATTACAAGTCATTC
AAA
GTCAGCATGATCCACAGACTGCGATTCACGACGGATGTGCAGTTAGGTATCTCTGGAGACAAAGTAG
AG
ATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCAATCGA
T
TGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCAGTCACGCGGTGTTTAAGCTCACG
TAT
CTAAGCAGCCATGACTACAAGCACCTGTACTTCGAGTCCGACGCAGCCACAGTCAGTGAGATCGTGC
TC
AAGGTTAACTACATCCTGGAATCACGAGCGAGCACTGCCCGAGCTGATTATCTTGCTCAAAAACAAAG
A
AAACTGAACAGGCGAACAAGCTTCAGCTTCCAGAAGGAGAAGAAATCAGGGCAGCAGTGA


Translation (486 aa):
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYIYAQSV
D
ITSSWDFGIRRRSNT
AQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKSLKEKPPSSGKQS
I
LSVRLEQCPLQLNNPFNEYSKFDGK
GHVGTTATKKIDVYLPLHSSQDRLLPMTVVTMASARVQDLIGLI
C
WQYTSEGREPKL
NDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLF
V
R
INAAHGFSLIQVDNTKVTMKEILLKAVKRRKGSQKISGSRADGVFEEDSQIDIATVQDMLSSHHYKSF
K
VSMIHRLRFTTDVQL
GISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSPSHAVFKLT
Y
LSSHDYKHLYFESDAATVSEIVLK
VNYILESRASTARADYLAQKQRKLNRRTSFSFQKEKKSGQQ



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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