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Report for CCDS89194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89194.1 Public Mus musculus 18 Psma8 23 108 98 CCDS HistoryNCBI Gene:73677Re-query CCDS DB by CCDS ID:89194.1Re-query CCDS DB by GeneID:73677See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234680.1 ENSMUSP00000157022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234680.1Link to Ensembl Protein Viewer:ENSMUSP00000157022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234680Re-query CCDS DB by Protein ID:ENSMUSP00000157022
Original member Current member NCBI NM_001360823.1 NP_001347752.1 Accepted alive Link to Nucleotide Sequence:NM_001360823.1Link to Protein Sequence:NP_001347752.1Re-query CCDS DB by Nucleotide ID:NM_001360823Re-query CCDS DB by Protein ID:NP_001347752Link to BLAST:NP_001347752.1

Chromosomal Locations for CCDS 89194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 14706231 14706332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14721167 14721293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14726504 14726628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14730979 14731101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14757622 14757684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14761347 14761439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGCTTCTCGGTATGACAGGGCAATCACCGTCTTCTCCCCAGATGGACACCTTTTCCAAGTGGAGTATG
CCCAGGAAGCAGTGAAGAAAGGCTCCACCGCGGTTGGAATTCGAGGAACTAATATAGTTGTGCTTGGGGT
AGAAAAAAAGTCAGTGGCCAAGCTTCAAGATGAAAGGACTGTGAGGAAAATCTGCGCTCTCGATGACCAT
GTCTGCATGGCTTTTGCAGGTCTGACAGCGGATGCTAGAGTGGTGATCAGCAGAGCGCGGGTGGAGTGCC
AGAGCCACAAGCTCACAGTGGAGGATCCCGTCACTGTAGAGTATATAACTCGCTTCATAGCGACGCTAAA
GCAGAAATATACCCAGAGCAATGGACGAAGGCCTTTTGGTATTTCAGCCTTAATTGTAGGCTTTGATGAT
GATGGCATCCCAAGATTGTATCAGACAGATCCCTCCGGGACTTACCACGCTTGGAAAGTTGTCCAGTCTG
GCGGAAAGAACATTGAACTGGCTATAATAAGAAGAGATCAACCTTTGAAGATGTTTAGTGCCAAAGAAAT
TGAACTGGAGGTGAGTGAAATAGAAAGGGAAAAGGACGAAGCAGAGAAGACAAAGTCAAAGAAGTCAACC
TAA

Translation (210 aa):
MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDH
VCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD
DGIPRLYQTDPSGTYHAWKVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVSEIEREKDEAEKTKSKKST


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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