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Report for CCDS88248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88248.1 Public Mus musculus 11 Msl1 23 108 98 CCDS HistoryNCBI Gene:74026Re-query CCDS DB by CCDS ID:88248.1Re-query CCDS DB by GeneID:74026See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107487.9 ENSMUSP00000103111.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107487.9Link to Ensembl Protein Viewer:ENSMUSP00000103111.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107487Re-query CCDS DB by Protein ID:ENSMUSP00000103111
Original member Current member NCBI NM_001361931.1 NP_001348860.1 Accepted alive Link to Nucleotide Sequence:NM_001361931.1Link to Protein Sequence:NP_001348860.1Re-query CCDS DB by Nucleotide ID:NM_001361931Re-query CCDS DB by Protein ID:NP_001348860Link to BLAST:NP_001348860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348860.1 600 Q6PDM1-2 600 100% 0 0

Chromosomal Locations for CCDS 88248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98795831 98796604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98799140 98799363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98800000 98800382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98802782 98802846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98803903 98803970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98804302 98804426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98804847 98804919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98805342 98805432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGACCATGAGATCCGCAGTGTTCAAGGCGGCCGCGGCCCCTGCCGGCGGCAACCCCGAGCAGCGACTGG
AC
TACGAGCGGGCTGCGGCGCTGGGCGGGCCCGAGGACGAGTCCGGGGCGGCCGAAGCCCATTTCCTCCC
C
CGGCATCGTAAGCTCAAGGAGCCGGGGCCCCCGCTGGCCTCTTCCCAGGGCGGGAGCCCCTCGCCCTCT
CCA
GCCGGCTGCGGCGGCGGCAAGGGCCGGGGCTTGTTACTCCCAGCCGGGGCGGCCCCCGGGCAGCAGG
AA
GAGAGCTGGGGCGGTTCGGTGCCCTTGCCCTGTCCGCCCCCAGCTACTAAACAAGCCGGCATCGGCGG
G
GAGCCAGTCGCAGCCGGCGCTGGCTGCAGCCCCCGGCCCAAGTATCAGGCGGTGCTGCCCATTCAGACG
GGC
TCTATCGTGGTGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCGGCTCCCC
CA
GCTGCCACCGCCTCGGACCCGGCGGGACCCCCACCACTACCTCTGCCCGGGCCACCACCCCTCGCGCC
C
ACCGCCACTGCTGGGACCCTGGCGGCCAGTGAGGGCAGATGGAAGAGTATAAGGAAGAGCCCTCTCGGG
GGT
GGCGGCGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCTGCTGCAATTGGACC
TC
ATCGAACAGCAGCAGCAGCAGTTGCAGGCCAAGGAGAAGGAGATAGAGGAGCTGAAGTCCGAGAGAGA
T
ACGCTCCTTGCTCGGATTGAACGTATGGAAAGGCGGATGCAGCTGGTGAAGAGGGATAACGAGAAGGAA
AGG
CACAAGCTGCTCCAGGGCTATGAACCTGAAGAGAGAGAGGAAGCAGAGTTGTCTGAGAAAATTAAAT
TG
GAGCGCCAGCCGGAGCTTTGCGAGACCTCCCAGGCTCTGCCTTCCAAGCCTTTCTCATGTGGCCGGAG
T
GGAAAGGGACACAAAAGGAAAACCCCATTTGGAAATACAGAAAGAAAGACTCCTGTTAAAAAGCTGGCT
CCT
GAATTTTCAAAAGTCAAAACAAAAACTCCTAAGCACTCTCCCATTAAAGAGGAACCCTGTGGTTCCA
TA
TCAGAAACTGTTTGTAAACGTGAATTGAGGAGCCAAGAAACCCCAGAAAAGCCCCGGTCTTCAGTGGA
T
ACCCCACCAAGACTCTCGACTCCCCAAAAGGGACCCAGCACCCACCCCAAGGAGAAAGCCTTCTCAAGT
GAG
ATGGAAGATTTGCCGTACCTTTCCACCACAGAAATGTATTTGTGTCGTTGGCACCAGCCTCCCCCAT
CA
CCGTTACCATTACGGGAATCCTCTCCAAAGAAGGAGGAGACTGTAGCAATTCCTTCTTGGAGGGACCA
C
TCAGTAGAGCCTCTAAGGGACCCAAATCCTTCAGACATTTTGGAGAACCTGGATGACAGTGTATTTTCA
AAG
AGGCATGCAAAACTGGAGCTAGACGAGAAGAGGAGAAAACGATGGGATATTCAGAGGATCAGGGAAC
AA
AGAATTTTACAGCGACTGCAGCTCAGAATGTATAAAAAGAAAGGAATTCAGGAATCTGAGCCTGAGGT
T
ACCTCATTTTTCCCTGAGCCAGATGATGTTGAAAGTTTGCTGATTACCCCCTTCTTGCCTGTTGTAGCA
TTT
GGACGGCCATTGCCAAAATTAGCTCCACAGAACTTTGAACTACCCTGGTTGGATGAGCGAAGCCGTT
GC
AGGTTGGAGATCCAGAAGAAGCACACACCTCACCGGACCTGTAGGAAGTAG


Translation (600 aa):
MTMRSAVFKAAAAPAGGNPEQRLDYERAAALGGPEDESGAAEAHFLPRHRKLKEPGPPLASSQGGSPSPS
P
AGCGGGKGRGLLLPAGAAPGQQEESWGGSVPLPCPPPATKQAGIGGEPVAAGAGCSPRPKYQAVLPIQT
G
SIVVAAAKEPTPWAGDKGGAAPPAATASDPAGPPPLPLPGPPPLAPTATAGTLAASEGRWKSIRKSPLG
G
GGGSGASSQAACLKQILLLQLDLIEQQQQQLQAKEKEIEELKSERDT
LLARIERMERRMQLVKRDNEKE
R
HKLLQGYEPEEREEAELSEKIKLERQPELCETSQALPSKPFSCGRSGKGHK
RKTPFGNTERKTPVKKLA
P
EFSKVKTKTPKHSPIKEEPCGSISETVCKRELRSQETPEKPRSSVDTPPRLSTPQKGPSTHPKEKAFSS
E
MEDLPYLSTTEMYLCRWHQPPPSPLPLRESSPKKEETVA
IPSWRDHSVEPLRDPNPSDILENLDDSVFS
K
RHAKLELDEKRRK
RWDIQRIREQRILQRLQLRMYKKKGIQESEPEVTSFFPEPDDVESLLITPFLPVVA
F
GRPLPKLAP
QNFELPWLDERSRCRLEIQKKHTPHRTCRK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser