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Report for CCDS86527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86527.1 Public Homo sapiens 16 RPGRIP1L 24 110 108 CCDS HistoryNCBI Gene:23322Re-query CCDS DB by CCDS ID:86527.1Re-query CCDS DB by GeneID:23322See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000568653.7 ENSP00000455451.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568653.7Link to Ensembl Protein Viewer:ENSP00000455451.3Re-query CCDS DB by Nucleotide ID:ENST00000568653Re-query CCDS DB by Protein ID:ENSP00000455451
Original member Current member EBI ENST00000679110.1 ENSP00000502853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679110.1Link to Ensembl Protein Viewer:ENSP00000502853.1Re-query CCDS DB by Nucleotide ID:ENST00000679110Re-query CCDS DB by Protein ID:ENSP00000502853
Original member Current member NCBI NM_001328422.2 NP_001315351.1 Accepted alive Link to Nucleotide Sequence:NM_001328422.2Link to Protein Sequence:NP_001315351.1Re-query CCDS DB by Nucleotide ID:NM_001328422Re-query CCDS DB by Protein ID:NP_001315351Link to BLAST:NP_001315351.1

Chromosomal Locations for CCDS 86527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 53695311 53695458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53696151 53696295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53700639 53700723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGTCTGGTCCAACTGATGAGACTGCAGGAGACTTGCCTGTGAAAGATACAGGTCTAAACCTCTTTGGAA
TGGGAGGGTTACAAGAAACTTCAACAACACGGACAATGAAGTCTCGCCAGGCAGTGTCACGTGTCAGTCG
TGAGGAACTGGAAGACAGATTTTTGCGTTTGCATGATGAGAACATTTTACTTAAACAGCATGCCCGCAAG
CAGGAGGATAAAATTAAAAGGTTCAAAGAAAAGGTGAGACAACCATTGAAGAATGAAAATAGGGTTTTTC
TGCTTAGAATCCATCCTAAGGAGGTGGTTCCAGTTCAGTTTCTACTCTGTGGACTTCAACAACCCACTGG
CATGCTATGTGCAGGCCTTTTACTTTGA

Translation (125 aa):
MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSRVSREELEDRFLRLHDENILLKQHARK
QEDKIKRFKEKVRQPLKNENRVFLLRIHPKEVVPVQFLLCGLQQPTGMLCAGLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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