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Report for CCDS8549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8549.1 Public Homo sapiens 12 GAPDH 20 108 85 CCDS HistoryNCBI Gene:2597Re-query CCDS DB by CCDS ID:8549.1Re-query CCDS DB by GeneID:2597See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000229239 ENSP00000229239 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229239Link to Ensembl Protein Viewer:ENSP00000229239Re-query CCDS DB by Nucleotide ID:ENST00000229239Re-query CCDS DB by Protein ID:ENSP00000229239
Original member Current member EBI,WTSI ENST00000396859 ENSP00000380068 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396859Link to Ensembl Protein Viewer:ENSP00000380068Re-query CCDS DB by Nucleotide ID:ENST00000396859Re-query CCDS DB by Protein ID:ENSP00000380068
Original member Current member EBI,WTSI ENST00000396861 ENSP00000380070 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396861Link to Ensembl Protein Viewer:ENSP00000380070Re-query CCDS DB by Nucleotide ID:ENST00000396861Re-query CCDS DB by Protein ID:ENSP00000380070
Original member Current member EBI,WTSI OTTHUMT00000268059 OTTHUMP00000174430 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000268059Link to Vega Protein Viewer:OTTHUMP00000174430Re-query CCDS DB by Nucleotide ID:OTTHUMT00000268059Re-query CCDS DB by Protein ID:OTTHUMP00000174430
Original member Current member EBI,WTSI OTTHUMT00000268060 OTTHUMP00000174431 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000268060Link to Vega Protein Viewer:OTTHUMP00000174431Re-query CCDS DB by Nucleotide ID:OTTHUMT00000268060Re-query CCDS DB by Protein ID:OTTHUMP00000174431
Original member Current member EBI,WTSI OTTHUMT00000268061 OTTHUMP00000174432 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000268061Link to Vega Protein Viewer:OTTHUMP00000174432Re-query CCDS DB by Nucleotide ID:OTTHUMT00000268061Re-query CCDS DB by Protein ID:OTTHUMP00000174432
Original member Current member NCBI NM_001289745.1 NP_001276674.1 Accepted alive Link to Nucleotide Sequence:NM_001289745.1Link to Protein Sequence:NP_001276674.1Re-query CCDS DB by Nucleotide ID:NM_001289745Re-query CCDS DB by Protein ID:NP_001276674Link to BLink:NP_001276674.1
Original member Current member NCBI NM_001289746.1 NP_001276675.1 Accepted alive Link to Nucleotide Sequence:NM_001289746.1Link to Protein Sequence:NP_001276675.1Re-query CCDS DB by Nucleotide ID:NM_001289746Re-query CCDS DB by Protein ID:NP_001276675Link to BLink:NP_001276675.1
Original member Current member NCBI NM_002046.5 NP_002037.2 Accepted alive Link to Nucleotide Sequence:NM_002046.5Link to Protein Sequence:NP_002037.2Re-query CCDS DB by Nucleotide ID:NM_002046Re-query CCDS DB by Protein ID:NP_002037Link to BLink:NP_002037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276674.1 335 P04406-1 335 100% 0 0
NP_001276675.1 335 P04406-1 335 100% 0 0
NP_002037.2 335 P04406-1 335 100% 0 0

Chromosomal Locations for CCDS 8549.1

Assembly GRCh38.p7 (GCF_000001405.33)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 12Link to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6534833 6534861 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6536494 6536593 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6536684 6536790 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6536920 6537010 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6537101 6537216 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6537309 6537390 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6537584 6537996 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12
12 6538101 6538170 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12Link to Vega Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTA
AC
TCTGGTAAAGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTT
C
CAATATGATTCCACCCATGGCAAATTCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATCAAT
GGA
AATCCCATCACCATCTTCCAGGAGCGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGAGT
AC
GTCGTGGAGTCCACTGGCGTCTTCACCACCATGGAGAAGGCTGGGGCTCATTTGCAGGGGGGAGCCAA
A
AGGGTCATCATCTCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTAT
GAC
AACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCA
TC
CATGACAACTTTGGTATCGTGGAAGGACTCATGACCACAGTCCATGCCATCACTGCCACCCAGAAGAC
T
GTGGATGGCCCCTCCGGGAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCATCCCTGCCTCT
ACT
GGCGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCC
GT
GTCCCCACTGCCAACGTGTCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGA
C
ATCAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGCACCAG
GTG
GTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCA
AC
GACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTACAGCAACAGGGTGGTGGACCT
C
ATGGCCCACATGGCCTCCAAGGAGTAA


Translation (335 aa):
MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN
G
NPITIFQ
ERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY
D
NSLKII
SNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAS
T
GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQ
V
VSSDFNSDTHSSTFDAGAGIALNDHFVKLIS
WYDNEFGYSNRVVDLMAHMASKE



Links Key
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