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Report for CCDS85455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85455.1 Public Mus musculus 7 Rnh1 23 108 98 CCDS HistoryNCBI Gene:107702Re-query CCDS DB by CCDS ID:85455.1Re-query CCDS DB by GeneID:107702See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210314.1 ENSMUSP00000147928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210314.1Link to Ensembl Protein Viewer:ENSMUSP00000147928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210314Re-query CCDS DB by Protein ID:ENSMUSP00000147928
Original member Current member NCBI NM_001172101.1 NP_001165572.1 Accepted alive Link to Nucleotide Sequence:NM_001172101.1Link to Protein Sequence:NP_001165572.1Re-query CCDS DB by Nucleotide ID:NM_001172101Re-query CCDS DB by Protein ID:NP_001165572Link to BLAST:NP_001165572.1

Chromosomal Locations for CCDS 85455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141160478 141160565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141160650 141160820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141162424 141162594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141162852 141163022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141163108 141163278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141163354 141163524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141164008 141164178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141164504 141164674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141166683 141166787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141168574 141168662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGTTCCGGGGCGCCCGGCTGCCTTTGAGAGTTTTTTTCGGGTCCCTTCCTGGCCCTCTTAATACGTGGC
AGAGCGGCTGGACCAGAAGACTGCACTGTGCACCCACCATGAGTCTTGACATCCAGTGTGAGCAGCTGAG
TGATGCCCGGTGGACAGAGCTCCTTCCTCTGATCCAGCAATACGAAGTGGTCAGGCTGGATGACTGTGGC
CTCACTGAAGTGCGGTGCAAAGACATCAGCTCAGCAGTCCAAGCCAACCCTGCCCTGACAGAGCTCAGCC
TTCGCACCAATGAACTGGGTGATGGCGGTGTGGGTCTGGTGCTCCAGGGCCTGCAGAATCCCACTTGTAA
GATCCAGAAGCTGAGCCTTCAGAACTGCGGCTTGACGGAGGCTGGCTGTGGGATCCTGCCTGGCATGCTG
CGCTCTTTGTCTACCCTGCGTGAGCTACATCTCAATGATAACCCTATGGGGGACGCAGGCCTGAAGCTGC
TCTGTGAAGGACTTCAGGACCCCCAGTGCCGTCTTGAGAAGCTTCAGTTGGAATACTGTAACCTCACAGC
TACCAGCTGCGAGCCCCTGGCTTCAGTGCTCAGGGTGAAAGCTGACTTTAAGGAGCTAGTATTGAGCAAC
AACGACCTCCATGAACCTGGTGTCCGTATTCTGTGCCAGGGCCTGAAGGACTCTGCCTGTCAACTGGAGT
CACTCAAGCTGGAGAACTGTGGTATCACAGCAGCCAACTGCAAGGATCTGTGCGATGTTGTGGCCTCCAA
AGCTTCGCTACAGGAACTGGACTTGAGCAGCAACAAGCTAGGTAATGCAGGCATTGCAGCACTGTGCCCA
GGACTGCTGCTTCCCAGCTGTAAGCTCAGGACTCTGTGGCTCTGGGAATGTGATATCACTGCAGAGGGCT
GCAAGGACCTGTGCCGTGTCCTCAGAGCCAAGCAGAGCCTGAAGGAACTCAGCCTTGCTTCCAATGAGCT
GAAGGATGAGGGTGCCCGGCTGCTGTGTGAGAGCCTATTAGAGCCTGGCTGTCAGCTGGAGTCACTGTGG
ATAAAGACCTGTAGCCTCACAGCTGCCTCCTGTCCCTACTTCTGCTCCGTGTTGACCAAAAGCCGTTCTC
TGTTGGAGCTGCAAATGAGCAGCAACCCACTGGGAGACGAGGGAGTCCAGGAGCTTTGCAAGGCCCTGAG
CCAGCCAGATACAGTGCTGCGTGAGCTTTGGTTGGGAGACTGTGATGTGACAAATAGTGGTTGCAGCAGC
CTTGCCAATGTCCTGCTGGCCAACCGCAGCCTGAGGGAACTGGACCTCAGTAACAACTGCATGGGGGGCC
CAGGTGTCCTGCAACTGCTGGAGAGCCTCAAACAGCCCAGCTGCACCCTTCAGCAGCTCGTCCTGTATGA
CATTTACTGGACAAATGAGGTGGAAGAACAGCTTCGGGCCCTGGAGGAGGAAAGGCCTTCCCTGAGGATC
ATTTCCTGA

Translation (492 aa):
MFRGARLPLRVFFGSLPGPLNTWQSGWTRRLHCAPTMSLDIQCEQLSDARWTELLPLIQQYEVVRLDDCG
LTEVRCKDISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGML
RSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSN
NDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCP
GLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLW
IKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSS
LANVLLANRSLRELDLSNNCMGGPGVLQLLESLKQPSCTLQQLVLYDIYWTNEVEEQLRALEEERPSLRI
IS


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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