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Report for CCDS84969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84969.1 Public Mus musculus 5 Limk1 23 108 98 CCDS HistoryNCBI Gene:16885Re-query CCDS DB by CCDS ID:84969.1Re-query CCDS DB by GeneID:16885See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111233.7 ENSMUSP00000106864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111233.7Link to Ensembl Protein Viewer:ENSMUSP00000106864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111233Re-query CCDS DB by Protein ID:ENSMUSP00000106864
Original member Current member NCBI NM_001305875.1 NP_001292804.1 Accepted alive Link to Nucleotide Sequence:NM_001305875.1Link to Protein Sequence:NP_001292804.1Re-query CCDS DB by Nucleotide ID:NM_001305875Re-query CCDS DB by Protein ID:NP_001292804Link to BLAST:NP_001292804.1

Chromosomal Locations for CCDS 84969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134657223 134657385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134657493 134657650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134657909 134657964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134659847 134660003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134661793 134661858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134662103 134662162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134664185 134664316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134665207 134665293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134665830 134666013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134668914 134669080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134669190 134669295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134670318 134670524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134672671 134672780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134673012 134673150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134678115 134678242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGGGAAGCTTAGGCCAGGCCACCCATGGGCTCCTCCAGACCTCCAGAGTCTCCGGACAGAGCTGCAGA
GGATGCAGCCAGCCTTGGCCCTGAGAAGGACCCGCTGCCTCCACCTCCGTGGGGCTAAGTGCTGCGAGTG
TAGCGTCTCCCTTTCACACCAGTACTACGAGAAGGATGGACAGCTCTTCTGCAAGAAGGACTACTGGGCC
CGCTATGGCGAGTCTTGCCACGGGTGCTCCGAGCACATCACCAAAGGGCTGGTCATGGTGGCTGGGGAGC
TGAAGTACCACCCTGAGTGTTTCATCTGCCTCGCCTGTGGAAACTTCATTGGCGATGGGGACACCTACAC
ACTGGTGGAGCACTCCAAGCTGTACTGTGGCCAGTGCTACTACCAGACCGTGGTAACTCCAGTCATCGAA
CAGATCCTACCTGACTCACCCGGCTCCCACCTGCCCCACACAGTCACCCTCGTGTCTATCCCAGCCTCTG
CCCATGGCAAACGAGGCCTGTCTGTCTCCATCGACCCCCCTCACGGCCCACCAGGATGTGGCACGGAGCA
TTCGCACACTGTCCGAGTCCAAGGAGTGGACCCAGGCTGCATGAGCCCAGATGTGAAGAATTCCATCCAC
GTTGGAGACCGGATCTTGGAAATCAATGGCACGCCCATCCGGAATGTGCCGCTGGACGAGATCGACTTGC
TGATCCAGGAGACCAGCCGCCTGCTCCAGCTGACCCTCGAGCACGACCCCCATGACTCACTGGGCCATGG
GCCCGTGTCGGATCCCAGCCCCCTGAGCTCCCCGGTGCACACTCCCAGCGGACAGGCAGCCAGCTCTGCC
CGGCAGAAACCTGTCTTGAGGAGCTGCAGTATTGACACGTCCCCGGGTACCAGCTCACTAGCCTCTCCAG
CCTCCCAGCGCAAGGACCTGGGTCGCTCCGAATCCCTCCGAGTGGTCTGCCGACCACACCGAATCTTCCG
GCCATCTGATCTCATCCATGGGGAAGTGCTGGGCAAGGGCTGTTTTGGCCAGGCCATCAAGGTGACACAC
CGAGAAACAGGCGAGGTGATGGTGATGAAGGAACTTATCCGGTTTGATGAGGAGACCCAGAGGACATTCC
TCAAGGAGGTAAAGGTCATGCGCTGCCTGGAGCACCCTAACGTGCTCAAGTTCATCGGAGTGCTCTACAA
GGACAAGCGGCTAAACTTCATCACAGAGTACATCAAGGGCGGCACCCTGCGGGGCATCATCAAGAACATG
GACAGCCAGTACCCGTGGAGTCAGAGGGTCAGCTTTGCCAAGGACATTGCATCAGGGATGGCCTACCTCC
ATTCGATGAACATCATCCACCGAGACCTCAACTCCCACAACTGTCTGGTCCGTGAGAATAGGAACGTGGT
GGTGGCCGACTTTGGGCTGGCTCGACTCATGATCGATGAAAAGAATCAGTCTGAAGACTTACGCAGCCTT
AAGAAGCCGGACCGCAAGAAGCGGTACACAGTGGTGGGCAACCCCTACTGGATGGCGCCAGAGATGATCA
ATGGTCGTAGTTATGATGAAAAGGTGGACGTGTTTTCCTTTGGAATTGTCCTCTGTGAGATTATCGGGCG
TGTGAATGCAGACCCTGACTATCTGCCCCGCACTATGGACTTTGGCCTCAATGTAAGGGGTTTCCTGGAC
CGCTACTGTCCACCAAACTGTCCCCCAAGTTTCTTCCCCATCACTGTGCGCTGCTGTGACCTGGATCCTG
AAAAGAGACCCTCTTTTGTAAAGCTGGAACAATGGCTAGAAACACTTCGCATGCACTTGTCTGGTCACCT
GCCACTGGGCCCACAACTGGAACAACTGGAGCGGGGCTTCTGGGAGACCTACCGGCGGGGCGAGAGCTCA
CTGCCTGCCCACCCCGAGGTCCCTGACTGA

Translation (639 aa):
MGKLRPGHPWAPPDLQSLRTELQRMQPALALRRTRCLHLRGAKCCECSVSLSHQYYEKDGQLFCKKDYWA
RYGESCHGCSEHITKGLVMVAGELKYHPECFICLACGNFIGDGDTYTLVEHSKLYCGQCYYQTVVTPVIE
QILPDSPGSHLPHTVTLVSIPASAHGKRGLSVSIDPPHGPPGCGTEHSHTVRVQGVDPGCMSPDVKNSIH
VGDRILEINGTPIRNVPLDEIDLLIQETSRLLQLTLEHDPHDSLGHGPVSDPSPLSSPVHTPSGQAASSA
RQKPVLRSCSIDTSPGTSSLASPASQRKDLGRSESLRVVCRPHRIFRPSDLIHGEVLGKGCFGQAIKVTH
RETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKNM
DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENRNVVVADFGLARLMIDEKNQSEDLRSL
KKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLD
RYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEQWLETLRMHLSGHLPLGPQLEQLERGFWETYRRGESS
LPAHPEVPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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