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Report for CCDS80962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80962.1 Public Mus musculus 9 Zfp426 23 108 98 CCDS HistoryNCBI Gene:235028Re-query CCDS DB by CCDS ID:80962.1Re-query CCDS DB by GeneID:235028See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163348.7 ENSMUSP00000126446.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163348.7Link to Ensembl Protein Viewer:ENSMUSP00000126446.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163348Re-query CCDS DB by Protein ID:ENSMUSP00000126446
Original member Current member NCBI NM_001310742.1 NP_001297671.1 Accepted alive Link to Nucleotide Sequence:NM_001310742.1Link to Protein Sequence:NP_001297671.1Re-query CCDS DB by Nucleotide ID:NM_001310742Re-query CCDS DB by Protein ID:NP_001297671Link to BLAST:NP_001297671.1

Chromosomal Locations for CCDS 80962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20469995 20471245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20471699 20471781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20473028 20473108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20474907 20475033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20476396 20476478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20478133 20478157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGCAGCTCCTGCTTCGTCCCATGGTCCTTCAGAGGACTCAGGCTGCCTTCAGGAACGAAAAATAGCAG
CAGAAATGATGTTGGTTGATTGCCTGACAGATGATCAGGAGTTAGTGAGCTTTGAGGATGTGATTGTGGA
CTTTACCCAAGAGGAGTGGAGCTCACTGAACCCAGATCAGAGGAACCTCTACAGAGATGTGATGCTGGAG
AACTACCAGAACCTGGCCACAGTAGGGTATCAGCTCATCAAACCCAGTTTGATCTCTTGGTTGGAACAAG
AAGAGTTTAGTAAAGGTCAGAAGATAGTTTTCCCAGAATGGAAATTACAGCTCGAAACCAAATGTTCAGC
GTTCCAGCAGGAATTTCTGAGGGGTAACATATCCAGTAGAATGCAAATGACAGGAATCAACAGAGGAAGG
GAGCTCTGTGATGGGACGCAATATGGAGACTTCTTCAGTGAACTCTCACCCCTCAGGACAGATATGAAAA
CTCAACCTGCACAGGATAATTATGGTTGTAGTCAGTACAGAAAAGACTTTCTAATGCTTCAGAGGAAAAA
CTGTGCTGGTGAGAAACTTTCTGAGTTCAGTCAGAGTGAAGAAACCGGCATGACCCCAGTTAAAGAGAAA
ATTGATACACAAGAGAAAGGGTTTGAATGCAGCGACTGTGGGAAGTCCTTTATGAGCCAGTCACACCTTC
AGACACACCAGAGAACTCACAGTGGAGACAAACTTTATGAATGGAATGAGTGTGGGAGAAGTTTTATAAA
CTCAAGACTTGCTGTGCTTATAGAAACTCTCAATGCAAAGAAACCTCACAGATGTAAGGAATGTGGGAAA
GGCTATCGATATCCTGCATATCTAAATATTCACATGCGAACCCACACTGGCGAAAAGCCCTATGAATGTA
AGGAGTGTGGGAAAGCCTTCAATTATTCCAATTCATTTCAGATCCATGGAAGAACTCACACAGGAGAGAA
GCCCTATGTATGTAGTCAGTGTGGGAAAGCCTTCACTCAGCACTCAGGTCTTAGTATCCATGTAAGGTCT
CACACTGGAGACAAGCCCTATGGGTGTAAGGAGTGCGGGAAAGCCTTTCTTACGTCCTCTCGACTGATCC
AACATATAAGAACTCACACAGGAGAGAAGCCTTTTGTGTGTGTGAAATGTGGGAAAGCCTTTGCTATTTC
TTCCAACCTTAATGGGCATCTGAAGTTGCATGCTGAAGAGAAGACCTGTGAGTGCAAGATTTGTGGGAAA
GCATTTGGATATCTTTCATGTCTTAATAACCACATGAGAACTCACAATGCTAAAAAATCATACACGTGCA
AGGAATGTGGGAAGGCCTTTAACTATTCCACCCACCTTAAAATTCACATGCGAATCCACACTGGAGAAAA
ACCCTATGAGTGTAAACAGTGTGGGAAAGCCTTCAGTCACTCCACTTCATTTCAGATCCATGAAAGAACC
CACACTGGAGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCATCTGTCCCAGTTCCTTCAGGA
TTCATGAAATAAGTCACACCCACACTGAAGAGAAACCCTATAAGTGTCAGCAGTGTGGAAAAGCCTACAG
TCATCCTCGTTCACTTCGCAGACATGAAAGAATTCACTAG

Translation (549 aa):
MAAPASSHGPSEDSGCLQERKIAAEMMLVDCLTDDQELVSFEDVIVDFTQEEWSSLNPDQRNLYRDVMLE
NYQNLATVGYQLIKPSLISWLEQEEFSKGQKIVFPEWKLQLETKCSAFQQEFLRGNISSRMQMTGINRGR
ELCDGTQYGDFFSELSPLRTDMKTQPAQDNYGCSQYRKDFLMLQRKNCAGEKLSEFSQSEETGMTPVKEK
IDTQEKGFECSDCGKSFMSQSHLQTHQRTHSGDKLYEWNECGRSFINSRLAVLIETLNAKKPHRCKECGK
GYRYPAYLNIHMRTHTGEKPYECKECGKAFNYSNSFQIHGRTHTGEKPYVCSQCGKAFTQHSGLSIHVRS
HTGDKPYGCKECGKAFLTSSRLIQHIRTHTGEKPFVCVKCGKAFAISSNLNGHLKLHAEEKTCECKICGK
AFGYLSCLNNHMRTHNAKKSYTCKECGKAFNYSTHLKIHMRIHTGEKPYECKQCGKAFSHSTSFQIHERT
HTGEKPYECKECGKAFICPSSFRIHEISHTHTEEKPYKCQQCGKAYSHPRSLRRHERIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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