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Report for CCDS80952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80952.1 Public Mus musculus 9 Mmp27 23 108 98 CCDS HistoryNCBI Gene:234911Re-query CCDS DB by CCDS ID:80952.1Re-query CCDS DB by GeneID:234911See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120900.7 ENSMUSP00000113231.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120900.7Link to Ensembl Protein Viewer:ENSMUSP00000113231.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120900Re-query CCDS DB by Protein ID:ENSMUSP00000113231
Original member Current member NCBI NM_001310717.1 NP_001297646.1 Accepted alive Link to Nucleotide Sequence:NM_001310717.1Link to Protein Sequence:NP_001297646.1Re-query CCDS DB by Nucleotide ID:NM_001310717Re-query CCDS DB by Protein ID:NP_001297646Link to BLAST:NP_001297646.1

Chromosomal Locations for CCDS 80952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7571458 7571601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7571945 7572183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7573292 7573440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7573519 7573650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7577300 7577461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7577635 7577755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7578108 7578238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7578904 7579063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7579765 7579868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7581158 7581393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGCCATACAAACAGAAACAAGCTTTAACTGAAGAGACAGGAATGAAGTGCCTTCTGTCTCTGATGGTTA
ATTTTATAACACTTTCCGCTGCATTTCCTCCAGACAGGAAGGACAAAAATGAGGAGAACAACCAACTGGC
CCAGGCATATCTCAACCAGTTCTACTCTCTTGAAATAGAAGGGAGTCATTTTGTCCAAAGCAAGAACAGG
AGTCTCTTTGATGGAAAACTTCGGGAAATGCAGGCATTTTTCGGATTGACAGTGACTGGAAAACTGGATT
CAGACACACTTGCGATCATGAAAGTGCCCAGGTGTGGGGTACCAGATGTGGGGCAATATGGCTACACACT
CCCTGGGTGGAGAAAATACAGCCTTACATACAGAATAATGAACTATACTCCTGATATGACACCAGCTGAT
GTGGATGAGGCTATTCAGAAAGCTCTACAAGTTTGGAGCAAGGTCACTCCACTGACGTTTACCAGGATAT
CCAAGGGGGTTGCAGATATAATGATAGCATTCAGGACAGGAGTCCATGGCTGGTGTCCTCGTCACTTTGA
TGGTCCTCTGGGAGTCCTTGGCCATGCCTTTCCTCCTGGTCTGGGTCTAGGTGGTGACACTCACTTTGAC
GAAGATGAAACATGGATAGCCAAGGATGGGGAAGGGTTCAACTTGTTTCTTGTGGCTGCTCATGAATTTG
GTCACTCTCTGGGGCTGTCCCACTCCAATGATCAAACAGCCTTGATGTTCCCCAATTACATCTCCCTGGA
TCCTAGCAAATACCCACTTTCTCAGGATGATATTGATGGGATCCAGTCCATCTATGGAAGTCCACCTAAG
GTAACCACCAAGCCAAGTGGAAATTCTGAACCCCACGCCTGTGACCCCACCTTGACTTTTGATGCTATCA
CTACTTTCCGCAGGGAAGTTATGTTCTTTAAAGGCAGGCACTTATGGAGGGTCTACTCTGATATTGCTGG
TGCTGAGTTTGAGTTTATTGATTCCTTCTGGCCATCTCTGCCAGCTGATCTTCAAGCTGCCTATGAAAGC
CCCAGAGATGAGCTCCTTGTTTTTAAAGATGAGAATTTCTGGGTCATCAGGGGATATTCTGTCTTGCCCG
GTTACCCCAAATCCATCCACACACTCGGATTTCCAAGACGTGTGAAGAAAATTGATGCAGCCGTCTGTGA
TCATGATACAAGAAAAACCTTCTTTTTTGTTGGCATCTGGTGCTGGAGGTATGATGAGATGGCACAAGCA
ATGGACAGAGGATTCCCACAGAGGATAATAAAGTGCTTCCCAGGAATTCGCCTCCGTGTGGATGCTGTCT
TCCAACATAATGGATTCCTCTATTTCTTCCATGGGTCGAGGCAATTTGAATATGACATGAAGGCGAAAAA
TATCACCCAAGTGATCAAAACCAATTCTTGGTTCCTGTGTAACGAACCATTAAACGCATCATTCAATGTC
AGTGTCAAAGGAAAAGCAAATTCAATTGGCACAGTGATATTACATCATAAAAGGTTAAGCTTGCTCACTT
TCAGTATTGTTCATGTGCTGACAAAAACATACAATTAA

Translation (525 aa):
MPYKQKQALTEETGMKCLLSLMVNFITLSAAFPPDRKDKNEENNQLAQAYLNQFYSLEIEGSHFVQSKNR
SLFDGKLREMQAFFGLTVTGKLDSDTLAIMKVPRCGVPDVGQYGYTLPGWRKYSLTYRIMNYTPDMTPAD
VDEAIQKALQVWSKVTPLTFTRISKGVADIMIAFRTGVHGWCPRHFDGPLGVLGHAFPPGLGLGGDTHFD
EDETWIAKDGEGFNLFLVAAHEFGHSLGLSHSNDQTALMFPNYISLDPSKYPLSQDDIDGIQSIYGSPPK
VTTKPSGNSEPHACDPTLTFDAITTFRREVMFFKGRHLWRVYSDIAGAEFEFIDSFWPSLPADLQAAYES
PRDELLVFKDENFWVIRGYSVLPGYPKSIHTLGFPRRVKKIDAAVCDHDTRKTFFFVGIWCWRYDEMAQA
MDRGFPQRIIKCFPGIRLRVDAVFQHNGFLYFFHGSRQFEYDMKAKNITQVIKTNSWFLCNEPLNASFNV
SVKGKANSIGTVILHHKRLSLLTFSIVHVLTKTYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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