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Report for CCDS8013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8013.1 Public Homo sapiens 11 FADS3 24 110 108 CCDS HistoryNCBI Gene:3995Re-query CCDS DB by CCDS ID:8013.1Re-query CCDS DB by GeneID:3995See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278829.7 ENSP00000278829.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278829.7Link to Ensembl Protein Viewer:ENSP00000278829.2Re-query CCDS DB by Nucleotide ID:ENST00000278829Re-query CCDS DB by Protein ID:ENSP00000278829
Original member Current member NCBI NM_021727.5 NP_068373.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021727.5Link to Protein Sequence:NP_068373.1Re-query CCDS DB by Nucleotide ID:NM_021727Re-query CCDS DB by Protein ID:NP_068373Link to BLAST:NP_068373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068373.1 445 Q9Y5Q0 445 100% 0 0

Chromosomal Locations for CCDS 8013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61873814 61873865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61875851 61875976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61876111 61876190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61876359 61876455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61876866 61876963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61877511 61877587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61878155 61878215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61878512 61878634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61878746 61878847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61879312 61879509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61880041 61880151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61891169 61891381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGGCGGCGTCGGGGAGCCGGGACCGCGGGAGGGACCCGCGCAGCCGGGGGCGCCGCTGCCCACCTTCT
GCTGGGAGCAGATCCGCGCGCACGACCAGCCCGGCGACAAGTGGCTGGTCATCGAGCGCCGCGTCTACGA
CATCAGCCGCTGGGCACAGCGGCACCCAGGGGGCAGCCGCCTCATCGGCCACCACGGCGCTGAGGACGCC
ACGGATGCCTTCCGTGCCTTCCATCAAGATCTCAATTTTGTGCGCAAGTTCCTACAGCCCCTGTTGATTG
GAGAGCTGGCTCCGGAAGAACCCAGCCAGGATGGACCCCTGAATGCGCAGCTGGTCGAGGACTTCCGAGC
CCTGCACCAGGCAGCCGAGGACATGAAGCTGTTTGATGCCAGTCCCACCTTCTTTGCTTTCCTACTGGGC
CACATCCTGGCCATGGAGGTGCTGGCCTGGCTCCTTATCTACCTCCTGGGTCCTGGCTGGGTGCCCAGTG
CCCTGGCCGCCTTCATCCTGGCCATCTCTCAGGCTCAGTCCTGGTGTCTGCAGCATGACCTGGGCCATGC
CTCCATCTTCAAGAAGTCCTGGTGGAACCACGTGGCCCAGAAGTTCGTGATGGGGCAGCTAAAGGGCTTC
TCCGCCCACTGGTGGAACTTCCGCCACTTCCAGCACCACGCCAAGCCCAACATCTTCCACAAAGACCCAG
ACGTGACGGTGGCGCCCGTCTTCCTCCTGGGGGAGTCATCCGTCGAGTATGGCAAGAAGAAACGCAGATA
CCTACCCTACAACCAGCAGCACCTGTACTTCTTCCTGATCGGCCCGCCGCTGCTCACCCTGGTGAACTTT
GAAGTGGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGGCGGATTTGCTCTGGGCCGCCAGCTTCT
ATGCCCGCTTCTTCTTATCCTACCTCCCCTTCTACGGCGTCCCTGGGGTGCTGCTCTTCTTTGTTGCTGT
CAGGGTCCTGGAAAGCCACTGGTTCGTGTGGATCACACAGATGAACCACATCCCCAAGGAGATCGGCCAC
GAGAAGCACCGGGACTGGGTCAGCTCTCAGCTGGCAGCCACCTGCAACGTGGAGCCCTCACTTTTCACCA
ACTGGTTCAGCGGGCACCTCAACTTCCAGATCGAGCACCACCTCTTCCCCAGGATGCCGAGACACAACTA
CAGCCGGGTGGCCCCGCTGGTCAAGTCGCTGTGTGCCAAGCACGGCCTCAGCTACGAAGTGAAGCCCTTC
CTCACCGCGCTGGTGGACATCGTCAGGTCCCTGAAGAAGTCTGGTGACATCTGGCTGGACGCCTACCTCC
ATCAGTGA

Translation (445 aa):
MGGVGEPGPREGPAQPGAPLPTFCWEQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDA
TDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLG
HILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGF
SAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSVEYGKKKRRYLPYNQQHLYFFLIGPPLLTLVNF
EVENLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEIGH
EKHRDWVSSQLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPF
LTALVDIVRSLKKSGDIWLDAYLHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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