NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS78602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78602.1 Public Mus musculus 1 Rpe 23 108 98 CCDS HistoryNCBI Gene:66646Re-query CCDS DB by CCDS ID:78602.1Re-query CCDS DB by GeneID:66646See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113995.1 ENSMUSP00000109628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113995.1Link to Ensembl Protein Viewer:ENSMUSP00000109628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113995Re-query CCDS DB by Protein ID:ENSMUSP00000109628
Original member Current member NCBI NM_001310642.1 NP_001297571.1 Accepted alive Link to Nucleotide Sequence:NM_001310642.1Link to Protein Sequence:NP_001297571.1Re-query CCDS DB by Nucleotide ID:NM_001310642Re-query CCDS DB by Protein ID:NP_001297571Link to BLAST:NP_001297571.1

Chromosomal Locations for CCDS 78602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66700907 66701017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66701617 66701648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66706446 66706525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66714577 66714716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66715113 66715247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66715959 66716045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66717754 66717876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGCGTCGGGCTGCAAGATCGGCCCGTCCATCCTCAACAGCGACCTGGCCAACCTGGGGGCCGAGTGCC
TGCGCATGCTGGACTCGGGGGCCGACTACCTGCACCTGGATGCACCCTGCTCTTCAGGGAGGTCAGTTTT
TTTGCATTTTGTTCCCAATATCACTTTTGGTCACCCTGTGGTTGAAAGCCTCCGAAAGCAGCTAGGCCAG
GACCCTTTCTTTGATATGCACATGATGGTGTCTAGGCCAGAACAGTGGGTAAAACCAATGGCTGTGGCAG
GTGCCAATCAATATACCTTTCATCTTGAGGCAACTGAGAACCCAGGGGCTTTGATTAAAGACATCCGGGA
GAATGGGATGAAGGTTGGCCTTGCCATCAAACCAGGAACTACAGTTGAATATTTGGCCCCATGGGCTAAT
CAAATAGATATGGCCTTGGTAATGACCGTAGAACCTGGGTTTGGAGGGCAGAAATTCATGGAAGACATGA
TGCCCAAGGTTCACTGGTTGAGGACCCAGTTTCCAACTTTGGATATAGAGGTCGATGGCGGAGTAGGTCC
TGACACTGTTCAGAAGTGTGCGGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCCATTATGAGGAGT
GATGACCCCAGAGCTGTTATCAACTTACTAAGAAACGTTTGCTCAGAAGCGGCTCAGAAACGTTCCCTTG
ATCGATGA

Translation (235 aa):
MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDAPCSSGRSVFLHFVPNITFGHPVVESLRKQLGQ
DPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWAN
QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAIMRS
DDPRAVINLLRNVCSEAAQKRSLDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH