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Report for CCDS77836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77836.1 Public Homo sapiens 3 HPS3 24 110 108 CCDS HistoryNCBI Gene:84343Re-query CCDS DB by CCDS ID:77836.1Re-query CCDS DB by GeneID:84343See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77836.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000460120.5 ENSP00000418230.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000460120.5Link to Ensembl Protein Viewer:ENSP00000418230.1Re-query CCDS DB by Nucleotide ID:ENST00000460120Re-query CCDS DB by Protein ID:ENSP00000418230
Original member Current member NCBI NM_001308258.2 NP_001295187.1 Accepted alive Link to Nucleotide Sequence:NM_001308258.2Link to Protein Sequence:NP_001295187.1Re-query CCDS DB by Nucleotide ID:NM_001308258Re-query CCDS DB by Protein ID:NP_001295187Link to BLAST:NP_001295187.1

Chromosomal Locations for CCDS 77836.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149129724 149129940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149141017 149141188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149141295 149141380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149145354 149145546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149150599 149150680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149153494 149153648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149155107 149155215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149157350 149157531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149158666 149158846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149160046 149160279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149162148 149162333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149162690 149162878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149163842 149163949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149167034 149167240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149167893 149167983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149172095 149172222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGGTGCAGCTGTACAACCTGCACCCGTTCGGGTCGCAGCAGGTGGTGCCCTGCAAGCTGGAGCCGGACC
GGTTCTGTGGCGGGGGGCGTGACGCGCTTTTCGTGGCGGCGGGCTGCAAGGTGGAGGCGTTCGCGGTGGC
CGGCCAGGAGCTGTGCCAGCCGCGGTGCGCCTTCTCCACGCTGGGCCGGGTGTTGCGCCTGGCCTACAGC
GAGGCTGGCATCAGTAATGAAATTTCACAGCTTGAGTCAGATGATTTTGTCATCTGCCAGAAGCCCCTGG
AACTTCTTGGTGAAAAAAGTGAACAGTCTGGATTATCTGTTACACTGGAGTCTACGGGATTAGCTGATGA
AAAAAGAAAATATTCCCACTTTCAGCACCTGCTCTATAGACGTTTTGCTCCTGATATTTCGTCCTATGTC
TTGTCTGATGACATCAAGCTACATTCCCTCCAGCTGCTACCCATTTACCAGACCGGTTCTCTTACATCTG
ATGGAAAAAATTTGTCTCAGGAAAAAGAATTGCTGAGTCTCTTTTGCTTTTTCTCCTTACCTCATGTGGG
CTATCTCTACATGGTTGTCAAATCTGTTGAATTGATGTCAGTCTACCAGTATCCTGAAAAGTCTCAGCAG
GCAGTACTCACGCCACAATTTTTGCACGTCATTACAAGTAACAACCTGCAGTGTTTCACTGTGCGGTGCA
GTGCGGCGGCAGCTCGTGAGGAGGACCCGTACATGGACACCACCCTGAAGGCTTGCCCACCTGTCAGTAT
GGATGTCTGTGCTTTAAGAATACAGCTTTTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACATC
ATACTTTTGACTAAAGCAGAACCTGAAGCCATTCCAGAGAGAAGACAGTCACCCAAGAGGCTTCTTTCGA
GAAAAGATACCAGTGTTAAAATCAAAATACCTCCTGTAGCTGAGGCTGGGTGGAATTTGTATATTGTGAA
TACGATCTCACCAGTGCAGCTGTACAAAGAGATGGTAGACTATAGCAATACCTATAAGACTGTCAAAACC
CAGAGCTGCATTCACCTTCTCAGTGAGGCTCATCTGTTAGTGCGAGCTGCCCTGATGGATGCCAGTCAGC
TGGAACCTGGAGAGAAGGCAGAGCTTTTGGAAGCATTTAAGGAAAGCTGTGGGCACCTTGGGGACTGTTA
CAGCAGGCTTGACTCCCAGCATTCTCATCTCACCTTGCCATACTATAAGATGTCTGGTTTGTCTATGGCT
GAAGTTCTGGCCCGCACGGACTGGACAGTAGAGGATGGATTACAGAAATACGAGAGAGGATTAATCTTTT
ACATTAATCATTCACTTTATGAAAACCTGGATGAAGAATTAAATGAAGAATTAGCAGCAAAAGTGGTTCA
GATGTTTTATGTGGCTGAGCCAAAGCAAGTGCCCCATATTCTCTGTAGTCCTTCTATGAAGAATATTAAT
CCTTTAACTGCCATGAGCTATCTAAGGAAGCTGGATACTTCTGGGTTTTCATCGATCTTAGTGACATTGA
CCAAGGCAGCAGTGGCTCTGAAAATGGGAGATCTTGACATGCACAGAAATGAAATGAAAAGCCATTCAGA
GATGAAGTTGGTATGTGGCTTCATTCTGGAACCTCGGCTGTTGATTCAACAGAGAAAGGGACAGATTGTT
CCAACCGAGCTTGCACTTCACTTGAAGGAAACTCAGCCTGGATTGCTTGTGGCTTCAGTTCTGGGCTTGC
AGAAGAACAACAAAATTGGAATTGAAGAAGCAGATTCCTTTTTTAAGGTGCTTTGTGCTAAGGATGAAGA
TACAATTCCTCAGCTCTTGGTAGACTTTTGGGAAGCTCAGCTAGTGGCATGTCTCCCAGATGTGGTACTT
CAGGAACTCTTTTTCAAACTCACATCACAGTACATCTGGAGATTGTCTAAGAGGCAGCCTCCTGACACCA
CACCATTGCGAACATCGGAGGATCTGATAAATGCCTGTAGTCATTATGGCTTAATTTATCCATGGGTTCA
CGTCGTAATATCATCTGATTCTTTAGCTGATAAAAATTATACAGAAGATCTTTCAAAATTACAGTCTCTT
ATATGTGGTCCTTCATTTGACATAGCTTCCATTATTCCGTTCTTGGAGCCACTTTCAGAAGACACTATTG
CCGGCCTCAGTGTCCATGTTCTGTGTCGTACACGCTTGAAAGAGTATGAACAGTGCATAGACATACTGTT
AGAGAGATGCCCGGAGGCAGTCATTCCATATGCTAATCATGAACTGAAAGAAGAGAACCGGACTCTGTGG
TGGAAAAAACTGTTGCCTGAACTTTGTCAGAGAATAAAATGTGGTGGAGAGAAGTATCAACTCTACCTGT
CATCATTAAAAGAAACATTGTCAATTGTTGCTGTGGAACTAGAACTGAAGGATTTCATGAATGTTCTCCC
AGAAGATGGTACTGCAACATTTTTCTTGCCATATCTTCTCTATTGCAGTCGAAAGAAACCATTGACTTAA

Translation (839 aa):
MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFSTLGRVLRLAYS
EAGISNEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPDISSYV
LSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKSVELMSVYQYPEKSQQ
AVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPVSMDVCALRIQLFIGLKAICHFKNHI
ILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPPVAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKT
QSCIHLLSEAHLLVRAALMDASQLEPGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMA
EVLARTDWTVEDGLQKYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNIN
PLTAMSYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQRKGQIV
PTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVDFWEAQLVACLPDVVL
QELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPWVHVVISSDSLADKNYTEDLSKLQSL
ICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTRLKEYEQCIDILLERCPEAVIPYANHELKEENRTLW
WKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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