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Report for CCDS77146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77146.1 Public Homo sapiens 18 DLGAP1 24 110 108 CCDS HistoryNCBI Gene:9229Re-query CCDS DB by CCDS ID:77146.1Re-query CCDS DB by GeneID:9229See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77146.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400150.7 ENSP00000383014.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400150.7Link to Ensembl Protein Viewer:ENSP00000383014.3Re-query CCDS DB by Nucleotide ID:ENST00000400150Re-query CCDS DB by Protein ID:ENSP00000383014
Original member Current member NCBI NM_001308390.2 NP_001295319.1 Accepted alive Link to Nucleotide Sequence:NM_001308390.2Link to Protein Sequence:NP_001295319.1Re-query CCDS DB by Nucleotide ID:NM_001308390Re-query CCDS DB by Protein ID:NP_001295319Link to BLAST:NP_001295319.1

Chromosomal Locations for CCDS 77146.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3499185 3499394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3502493 3502645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3508570 3508661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3534194 3534615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3567490 3567581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3581875 3582248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3656084 3656113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3729135 3729375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3742335 3742512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3814059 3814273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3874154 3874228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGATCGACCTTTTTAAGGCTGAGTGGGTTTCTTCAGTTTGTGTGCAAGTTTCAAGAAATGGAAGGACTG
AC
CAGGTTCCACAAGATGAATGGACAGGGTACACCCCACGAGGTAAAGATGATGAAATTCCATGCCGAAG
A
ATGCGGAGTGGCAGTTATATCAAGGCCATGGGGGATGAAGACAGTGGAGACTCAGACACGAGTCCTAAG
CCT
TCTCCAAAAGTTGCTGCGCGGAGAGAAAGCTATCTCAAGGCTACTCAGCCATCCCTTACAGAACTCA
CC
ACACTCAAAATCTCCAATGAACACTCACCCAAACTCCAGATCCGGAGTCATAGTTACCTGAGGGCAGT
G
AGTGAAGTCTCCATCAACCGGAGCCTGGACAGCCTGGACCCTGCAGGCTTGCTCACATCACCAAAGTTC
CGC
TCCAGGAATGAGAGCTACATGCGAGCCATGAGCACCATCAGCCAGGTGAGCGAGATGGAAGTGAACG
GG
CAGTTCGAGTCCGTGTGCGAGTCCGTGTTCAGCGAGCTGGAGTCGCAGGCCGTGGAAGCGCTGGACCT
G
CCCATGCCCGGCTGCTTCCGCATGCGGAGCCACAGCTATGTGCGGGCCATTGAGAAAGGCTGCTCCCAG
GAC
GACGAGTGCGTGTCCCTGAGGTCGTCCTCGCCGCCGCGCACCACCACCACCGTTAGGACCATCCAGA
GC
AGCACGGGTGTCATAAAACTGAGTTCTGCAGTTGAAGTGTCATCTTGCATTACAACATATAAGAAGAC
A
CCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAG
TCA
GCCCAGGATGCCTACATGGACGGACAGGGCCAGCGAGGAGATATTATCAGCCAGTCTGGACTCAGCA
AC
TCCACCGAGAGCCTGGACAGTATGAAGGCTCTGACAGCCGCCATCGAAGCTGCAAACGCCCAGATCCA
T
GGCCCTGCCAGTCAACACATGGGCAATAACACTGCCACCGTCACCACCACGACTACCATAGCCACCGTC
ACC
ACGGAGGACAGGAAGAAGGACCACTTTAAGAAAAATCGATGCCTGTCTATCGGGATACAGGTGGATG
AT
GCTGAAGAACCTGACAAAACAGGGGAGAATAAAGCACCCAGTAAGTTCCAGTCCGTGGGAGTGCAAGT
A
GAAGAAGAGAAGTGCTTCCGCAGGTTCACTCGATCCAACAGTGTGACGACAGCAGTACAGGCCGACCTG
GAC
TTCCATGATAATCTGGAAAATTCTCTGGAATCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCA
GA
CAGTTCTCCCGCGATGCCAGCACCTCCACAGTCAGCATTCAGGGCTCAGGAAACCATTACCATGCCTG
T
GCCGCCGATGATGACTTTGACACGGATTTTGACCCCTCTATTCTGCCTCCTCCGGACCCCTGGATTGAC
TCT
ATCACTGAAGACCCTCTGGAGGCCGTGCAAAGGTCAGTGTGCCACCGGGATGGCCACTGGTTCCTGA
AG
CTTCTCCAGGCAGAGCGAGACCGCATGGAGGGGTGGTGTCAACAGATGGAGCGGGAAGAACGGGAAAA
C
AACCTGCCCGAAGACATTCTAGGAAAAATCCGAACCGCAGTGGGCAGTGCCCAACTTCTCATGGCCCAG
AAA
TTCTACCAGTTCAGAGAACTGTGTGAAGAAAACCTGAATCCTAATGCTCATCCAAGACCCACCTCCC
AG
GATTTGGCGGGGTTTTGGGACATGCTGCAGTTGTCCATAGAAAATATTAGTATGAAATTTGATGAACT
T
CATCAGTTAAAGGCCAATAATTGGAAACAGATGGATCCTCTTGACAAGAAGGAGAGAAGGGCCCCTCCT
CCA
GTGCCAAAGAAGCCGGCGAAGGGCCCCGCGCCGCTGATCCGGGAGCGCTCGCTGGAGAGCTCGCAGC
GC
CAGGAGGCCCGCAAGCGCCTGATGGCCGCCAAGCGCGCCGCGTCCGTCCGCCAGAACTCGGCCACCGA
G
AGCGCCGAGAGCATCGAGATCTACATCCCCGAGGCGCAGACCCGGCTCTGA


Translation (693 aa):
MIDLFKAEWVSSVCVQVSRNGRTDQVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSDTSPK
P
SPKVAARRESYLKATQPSLTELTTL
KISNEHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGLLTSPKF
R
SRNESYMRAMSTISQ
VSEMEVNGQFESVCESVFSELESQAVEALDLPMPGCFRMRSHSYVRAIEKGCSQ
D
DECVSLRSSSPPRTTTTVRTIQSST
GVIKLSSAVEVSSCITTYKKTPPPVPPRTTTKPFISITAQSSTE
S
AQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGNNTATVTTTTTIATV
T
TEDRKKDHFKKNRCLSIGIQ
VDDAEEPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADL
D
FHDNLENSLESIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWID
S
ITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPED
ILGKIRTAVGSAQLLMAQ
K
FYQFRELCEENL
NPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPP
P
VPKKPAKGPAPLIRERSLESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQTRL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser