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Report for CCDS71818.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71818.2 Public Mus musculus 6 Zfand4 23 108 98 CCDS HistoryNCBI Gene:67492Re-query CCDS DB by CCDS ID:71818.2Re-query CCDS DB by GeneID:67492See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 71818.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and orthologous protein data.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 71818.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036503.13 ENSMUSP00000040057.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036503.13Link to Ensembl Protein Viewer:ENSMUSP00000040057.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036503Re-query CCDS DB by Protein ID:ENSMUSP00000040057
Original member Current member NCBI NM_001309446.1 NP_001296375.1 Accepted alive Link to Nucleotide Sequence:NM_001309446.1Link to Protein Sequence:NP_001296375.1Re-query CCDS DB by Nucleotide ID:NM_001309446Re-query CCDS DB by Protein ID:NP_001296375Link to BLAST:NP_001296375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001296375.1 739 D3Z3C6 739 100% 0 0

Chromosomal Locations for CCDS 71818.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116273611 116273872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116284740 116284815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116285854 116285921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116287982 116288168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116305617 116305761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116313845 116315017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116315588 116315642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116328207 116328324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116329349 116329484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGTTCAAAGCTGATTTGGGTAGAATTGGAATACAGTTGCATACAACATATTCCAGAAGAATCAGAAAAG
TCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGAAGATAACGTGGGACCATTTTATTTCAA
ACTTCCTTTCTATGACACCATGGAACTCTTCATCGAAACGTTGACTGGAACATGTTTTGAACTAAGAGTT
TCACCCTTTGAAGCTGTTATCTCTGTGAAAGGAAAAATTCAAAGATTGGAAGGTATTCCCATCTGTCAGC
AGCACTTAATTTGGAATAACATGGAACTTGAAGATGATTATTGCTTGAATGATTACAACATTTCAGAAGG
TTGTACCTTGAAGCTGGTATTGGCTATGCGTGGTGGACCGATAAGTACTAGAAAAGTTCCTGTGGAAGAC
CCACTCAGGGAGCTTGCTGAGTACATGGATTCCAGTCGAGATGAGGTCTGGGAAAAGACCTCCTGCAACA
AACAAGTTACGTTTTTGGTATACCGGGAAGGAGATCAGCTGAATTTCTTCCGTGTGGTAGATAGAGGGGA
TGGCACTTTAACCCCACTGTCTGAGTCTTTAAGTGGTTCTGTGTATAATTTGTATACAGATGAGGATGAA
GAAGCTGAGCCTTCTCCTTCTGGGCAACAGATCATTGAAAACTCTATAACTATGAATAAGATGAAGCTGC
TGAAGGCTAAGATGGAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGTTGTCAAGGTAAAACCTCGCCC
ACCTCTAGCTCCTCGGCCGACCAGCAGTTCTACAGCAGCAGCCCGGCACAGATTGCTAAGAGTCCTCCCT
CATATTGGGCAGTCTTGTTTACCTTCTGGGAATGCACATCTCCCTGAAACATCCAGGAATGCAGGCCCAA
GTCCTGCAGCTCAGGCCCCTGCCGATAGACCAGTGTCATCTCTCAGGAATGAGCTGCTGAAGGATGATGA
CAATTGGGAGATTAACATGCTGTCTCACTCCACGAGTAGTATCAGACTGCTTCCTCAGTTGACCCATATA
GAACTGGAAAGTGACAAAGAGCTCGCAGATTCTGTTCTTCATCTTGGATCATCCCTGTCTAGGCGGACCA
AGCACCTTTCAGGAAACTTGTTATCTAATAATGAGGATGACGTAGTCTTGTTTCCACGGTCAGAAGAATG
TGTAGCTGATGAGTTGCTCCTGCCAGAAGTAGGTGCTTTTGCTCCATTTGCAGAAGGAACCGGTGCCGAG
CAGAGCAGTGGTGTAGAAGGGTTAGGGAAGGTAACTCCAGAGTTCCCACTCACTAAAGGTGATGGAGGAC
TGAGGGCAGCGGAGCAGCCTCTGAGCCATGTGGCAAGAGTGCTGAGCAGTGAGCCAGGAGACAATGCAGT
TCTTAACCACCGAGAGCCAAGCTCTCACAAGAACAGACTCCTGTCCCCTCTTCTCTGTGCTGCACCAGTG
TCACTACATAATTCTCTGGTGAAGCCACAGAGACAGTCAAAATGTTTTGAGTCAGGCAACCCCTCAGCGT
CTACTTCACAAAACACCCTGCGGGAATTGGACATTCGAACCATAGCAGATTCTTCTTTCTCTAGGACTGC
TCGCTTCCGTGGTGTTAAAGTCGATTCGCCTGGAAAAAGGTCTGATATTATTTCTAAAGTGGAAGCCCGA
GATATTACAGAAATGGCTAATAAAGCTTCCAAAGAGCCTGTTGGTTGTGTAAACAATAATGGCTTTTTGG
CTTCACTGGCACGGAGTGCAAGCAGAGACAGTTTGCAGAGCACCCATGGGGCATGCAGGCTTCGGTCCTC
TGGAATTGGTTTGTCTACAAACTTCCAGCATTTTCAGGATGAAAACATTAGGAAAAGTTCTCCCCAGTCA
GAACCTACAGATTTTTTTCTATCTGCCCGCGGTATTGGAATGAGTGGAAGTAATGCAGCAGCAGGGAAGA
GAATAGGAGAAAGCATCCACCACCTTCCACCTGTGAAAGCCCCTCTTCAAACAAAGAAGAAAATAATGAA
ACATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCCACTAGCTTTGAATGCAGATGTGGAAACAACTTC
TGTGCATCTCACCGTTATGCAGAAGCTCACGGCTGCACTTACGACTACAAAAGTGCAGGGAGGAGATACT
TAGAGGAGGCCAACCCTGTGGTCAACGCACCAAAACTTCCCAAAATCTAA

Translation (739 aa):
MFKADLGRIGIQLHTTYSRRIRKVKVMDNRKEPPFFNEDNVGPFYFKLPFYDTMELFIETLTGTCFELRV
SPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLNDYNISEGCTLKLVLAMRGGPISTRKVPVED
PLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREGDQLNFFRVVDRGDGTLTPLSESLSGSVYNLYTDEDE
EAEPSPSGQQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKPRPPLAPRPTSSSTAAARHRLLRVLP
HIGQSCLPSGNAHLPETSRNAGPSPAAQAPADRPVSSLRNELLKDDDNWEINMLSHSTSSIRLLPQLTHI
ELESDKELADSVLHLGSSLSRRTKHLSGNLLSNNEDDVVLFPRSEECVADELLLPEVGAFAPFAEGTGAE
QSSGVEGLGKVTPEFPLTKGDGGLRAAEQPLSHVARVLSSEPGDNAVLNHREPSSHKNRLLSPLLCAAPV
SLHNSLVKPQRQSKCFESGNPSASTSQNTLRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEAR
DITEMANKASKEPVGCVNNNGFLASLARSASRDSLQSTHGACRLRSSGIGLSTNFQHFQDENIRKSSPQS
EPTDFFLSARGIGMSGSNAAAGKRIGESIHHLPPVKAPLQTKKKIMKHCFLCGKKTGLATSFECRCGNNF
CASHRYAEAHGCTYDYKSAGRRYLEEANPVVNAPKLPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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