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Report for CCDS64188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64188.1 Public Homo sapiens 5 HOMER1 24 110 108 CCDS HistoryNCBI Gene:9456Re-query CCDS DB by CCDS ID:64188.1Re-query CCDS DB by GeneID:9456See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64188.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282260.10 ENSP00000282260.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282260.10Link to Ensembl Protein Viewer:ENSP00000282260.6Re-query CCDS DB by Nucleotide ID:ENST00000282260Re-query CCDS DB by Protein ID:ENSP00000282260
Original member Current member NCBI NM_001277077.1 NP_001264006.1 Accepted alive Link to Nucleotide Sequence:NM_001277077.1Link to Protein Sequence:NP_001264006.1Re-query CCDS DB by Nucleotide ID:NM_001277077Re-query CCDS DB by Protein ID:NP_001264006Link to BLAST:NP_001264006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264006.1 224 Q86YM7-2 224 100% 0 0

Chromosomal Locations for CCDS 64188.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 79376009 79376197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79396823 79396903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79397527 79397637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79450990 79451121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79456862 79457018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79512770 79512774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGGGGAACAACCTATCTTCAGCACTCGAGCTCATGTCTTCCAAATTGACCCAAACACAAAGAAGAACT
GGGTACCCACCAGCAAGCATGCAGTTACTGTGTCTTATTTCTATGACAGCACAAGAAATGTGTATAGGAT
AATCAGTTTAGATGGCTCAAAGGCAATAATAAATAGTACCATCACCCCAAACATGACATTTACTAAAACA
TCTCAGAAGTTTGGCCAGTGGGCTGATAGCCGGGCAAACACCGTTTATGGATTGGGATTCTCCTCTGAGC
ATCATCTTTCGAAAGTGACTGAACTTGAATGTGTTAGTAGCCAAGCAAATGCAGTACATACTCATAAGAC
AGAATTAAATCAGACAATACAAGAACTGGAAGAGACACTGAAACTGAAGGAAGAGGAAATAGAAAGGTTA
AAACAAGAAATTGATAATGCCAGAGAACTACAAGAACAGAGGGATTCTTTGACTCAGAAACTACAGGAAG
TAGAAATTCGGAACAAAGACCTGGAGGGACAACTGTCTGACTTAGAGCAACGTCTGGAGAAAAGTCAGAA
TGAACAAGAAGCTTTTCGCAATAACCTGAAGACACTCTTAGAAATTCTGGATGGAAAGATATTTGAACTA
ACAGAATTACGAGATAACTTGGCCAAGCTACTAGAATGCAGCTAA

Translation (224 aa):
MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKT
SQKFGQWADSRANTVYGLGFSSEHHLSKVTELECVSSQANAVHTHKTELNQTIQELEETLKLKEEEIERL
KQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFEL
TELRDNLAKLLECS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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