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Report for CCDS59653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59653.1 Public Mus musculus 3 Ntng1 23 108 98 CCDS HistoryNCBI Gene:80883Re-query CCDS DB by CCDS ID:59653.1Re-query CCDS DB by GeneID:80883See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156177.8 ENSMUSP00000119534.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156177.8Link to Ensembl Protein Viewer:ENSMUSP00000119534.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000156177Re-query CCDS DB by Protein ID:ENSMUSP00000119534
Original member Current member NCBI NM_133488.1 NP_597995.1 Accepted alive Link to Nucleotide Sequence:NM_133488.1Link to Protein Sequence:NP_597995.1Re-query CCDS DB by Nucleotide ID:NM_133488Re-query CCDS DB by Protein ID:NP_597995Link to BLAST:NP_597995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_597995.1 460 Q8R4G0-5 460 100% 0 0

Chromosomal Locations for CCDS 59653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109782682 109782911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109841510 109841575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109851765 109851791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109872200 109872372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109934569 109935209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 110135263 110135508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGTATTTGTCAAGATTCCTGTCGATCCATGCCCTGTGGGTGACAGTGTCCTCTGTGATGCAGCCCTACC
TT
TTCGTGTGGGGACATTATGATGTATGTAAGAGCCTGATTTACACAGAAGAAGGCAAAGTTTGGGATTA
C
ACAGCCTGCCAGCCGGAATCCACGGACATGACCAAGTATCTGAAAGTGAAACTGGACCCTCCGGATATT
ACC
TGTGGAGACCCTCCAGAGTCCTTCTGTGCAATGGGCAACCCTTACATGTGCAATAATGAGTGTGATG
CG
AGTACCCCTGAACTGGCACACCCTCCTGAGCTGATGTTTGATTTTGAAGGAAGACATCCCTCCACATT
T
TGGCAGTCTGCTACTTGGAAGGAGTACCCCAAACCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAA
ACC
ATTGAACTCACAGACAACATAGTTATTACCTTTGAATCGGGGCGTCCAGACCAAATGATCCTAGAGA
AA
TCTCTCGACTACGGACGAACATGGCAGCCCTATCAGTATTATGCCACAGACTGCCTCCATGCATTCCA
C
ATGGACCCGAAATCCGTGAAGGATTTATCTCAGCACACGGTCTTGGAAATCATTTGCACGGAAGAGTAC
TCC
ACTGGGTACTCCACGAATAGCAAAATAATCCACTTCGAGATCAAAGACAGGTTTGCGTTTTTCGCTG
GA
CCTCGGCTACGAAATATGGCTTCCCTCTATGGACAGCTGGATACAACCAAGAAACTCAGAGATTTCTT
C
ACTGTCACAGACCTGAGGATCAGGCTGTTGAGACCCGCCGTTGGGGAAATATTTGTAGATGAACTACAT
TTG
GCACGTTACTTTTATGCGATCTCAGACATAAAGGTGCGAGGAAGGTGCAAGTGCAACCTGCATGCCA
CT
TCGTGTTTGTATGACAACAGCAAACTGACATGTGAATGTGAGCACAACACTACAGGTCCCGACTGTGG
G
AAATGCAAGAAGAACTACCAGGGCCGACCTTGGAGCCCCGGCTCATACCTCCCCATCCCCAAAGGCACC
GCA
AACACCTGTATCCCCAGCATTTCCAGTATCGGTACTCCTCCAAAGTTTAATAGGATATGGCCGAATA
TT
TCTTCCCTTGAGGTTTCTAACCCAAAACAAGCTAATGTCTGCGACAATGAGCTCCTGCACTGCCAGAA
T
GGAGGGACCTGCCAGAACAATGTGCGCTGCGCGTGCCCAGACGCCTACACCGGCATCCTCTGTGAGAAG
CTA
CGGTGCGAAGAGGCGGGCAGCTGTGGCTCCGAATCCGGCCAGGGAGCACCCCCGCGGGGCTCCCCAG
CA
CTGCTGCTGCTGACCATGCTGCTGGGGACTGCCGGTCCCCTGGTGTTCTAG


Translation (460 aa):
MYLSRFLSIHALWVTVSSVMQPYLFVWGHYDVCKSLIYTEEGKVWDYTACQPESTDMTKYLKVKLDPPDI
T
CGDPPESFCAM
GNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSK
T
IELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHTVLEIICTEEY
S
TGYSTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELH
L
ARYFYAISDIKVRG
RCKCNLHATSCLYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGT
A
NT
CIPSISSIGTPPKFNRIWPNISSLEVSNPKQANVCDNELLHCQNGGTCQNNVRCACPDAYTGILCEK
L
RCEEAGSCGSESGQGAPPRGSPALLLLTMLLGTAGPLVF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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