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Report for CCDS58235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58235.1 Public Homo sapiens 12 CSAD 24 110 108 CCDS HistoryNCBI Gene:51380Re-query CCDS DB by CCDS ID:58235.1Re-query CCDS DB by GeneID:51380See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453446.6 ENSP00000410648.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453446.6Link to Ensembl Protein Viewer:ENSP00000410648.2Re-query CCDS DB by Nucleotide ID:ENST00000453446Re-query CCDS DB by Protein ID:ENSP00000410648
Original member Current member EBI ENST00000444623.6 ENSP00000415485.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444623.6Link to Ensembl Protein Viewer:ENSP00000415485.1Re-query CCDS DB by Nucleotide ID:ENST00000444623Re-query CCDS DB by Protein ID:ENSP00000415485
Original member Current member NCBI NM_001244705.2 NP_001231634.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001244705.2Link to Protein Sequence:NP_001231634.1Re-query CCDS DB by Nucleotide ID:NM_001244705Re-query CCDS DB by Protein ID:NP_001231634Link to BLAST:NP_001231634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231634.1 493 Q9Y600-1 493 100% 0 0

Chromosomal Locations for CCDS 58235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53158511 53158684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53159623 53159712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53159887 53159938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53160120 53160319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53160763 53160844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53161127 53161191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53161273 53161389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53170072 53170126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53170423 53170502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53171326 53171441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53171882 53171988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53172346 53172436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53172522 53172648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53173345 53173470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTGGGGACCCAGTGGCTGTGGAAGCCTTGCTCCGGGCCG
TG
TTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGAACCAGTGTCTCCCAGAAGGTCTGTGAGTGGAA
G
GAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCGGAGCCAGGGCGAGTCACAGAAGCAGATC
CTG
GAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTCACCCTCGGTTCTTCAACCAGCTCT
TC
TCTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGCCTCAACACCAGCCAGTACAC
A
TATGAAATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACTGCGGGCCCTGGTGGGC
TGG
AGCTCTGGGGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTGTAAATCTGGCCC
GC
TATCAGCGCTACCCGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTATTCACATC
G
AAGGAGTGTCACTACTCCATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTG
GTC
AAGGCTGATGAGAGAGGGAAAATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTG
AG
GGTGCTGTGCCGTTCCTGGTCAGTGCCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGA
G
GCAATTGCTGATGTGTGCCAGCGTCATGGGCTATGGCTGCATGTGGATGCTGCCTGGGGTGGGAGCGTC
CTG
CTGTCACAGACACACAGGCATCTCCTGGATGGGATCCAGAGGGCTGACTCTGTGGCCTGGAATCCCC
AC
AAGCTCCTCGCAGCAGGCCTGCAATGCTCTGCACTTCTTCTCCAGGATACCTCGAACCTGCTCAAGCG
C
TGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAGGACAAGTTCTACGATGTGGCTCTGGACACGGGA
GAC
AAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCACAGGGCG
AT
CAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCCGGTACCTGGTGGAGGAAATGAAGAA
G
CGGGAAGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGTTTCTGGTTCGTACCCCCCAGC
CTG
CGAGGGAAGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGCCCCCGTGCTCAAGGAGC
GC
ATGGTGAAGGAGGGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCAACTTCTTCCGTGT
G
GTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAGCGGCTAGGC
CAG
GACCTGTGA


Translation (493 aa):
MADSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQI
L
ERCRAVIRYSVKT
GHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVG
W
SSGDGIFCP
GGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRV
V
KADE
RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV
L
LSQTHRHLLDGIQ
RADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTG
D
KVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLA
RYLVEEMKKREGFELVMEPEFVNVCFWFVPPS
L
RGKQESPDYHERLSK
VAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLG
Q
DL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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