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Report for CCDS58175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58175.1 Public Homo sapiens 11 ARHGAP20 24 110 108 CCDS HistoryNCBI Gene:57569Re-query CCDS DB by CCDS ID:58175.1Re-query CCDS DB by GeneID:57569See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527598.1 ENSP00000431399.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527598.1Link to Ensembl Protein Viewer:ENSP00000431399.1Re-query CCDS DB by Nucleotide ID:ENST00000527598Re-query CCDS DB by Protein ID:ENSP00000431399
Original member Current member EBI ENST00000528829.5 ENSP00000436319.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528829.5Link to Ensembl Protein Viewer:ENSP00000436319.1Re-query CCDS DB by Nucleotide ID:ENST00000528829Re-query CCDS DB by Protein ID:ENSP00000436319
Original member Current member NCBI NM_001258417.2 NP_001245346.1 Accepted alive Link to Nucleotide Sequence:NM_001258417.2Link to Protein Sequence:NP_001245346.1Re-query CCDS DB by Nucleotide ID:NM_001258417Re-query CCDS DB by Protein ID:NP_001245346Link to BLAST:NP_001245346.1
Original member Current member NCBI NM_001258418.2 NP_001245347.1 Accepted alive Link to Nucleotide Sequence:NM_001258418.2Link to Protein Sequence:NP_001245347.1Re-query CCDS DB by Nucleotide ID:NM_001258418Re-query CCDS DB by Protein ID:NP_001245347Link to BLAST:NP_001245347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245346.1 1155 Q9P2F6-4 1155 100% 0 0
NP_001245347.1 1155 Q9P2F6-4 1155 100% 0 0

Chromosomal Locations for CCDS 58175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 110579370 110581225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110582321 110582435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110583548 110583737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110586216 110586325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110590648 110590809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110591977 110592155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110606561 110606749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110608984 110609050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110611309 110611386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110614561 110614645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110615553 110615594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110624162 110624311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110630628 110630792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110690547 110690626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3468 nt):
ATGAAAACACTAGCAGAAAGGAGGAGGAGCGCTCCATCTCTTATCCTGGATAAAGCCCTACAAAAACGGC
CTACTACCAGGGACAGTCCTTCTGCTAGTGTTGACACATGCACATTTCTGTCATCATTAGTGTGCTCCAA
TAGGACTCTGCTGATTGATGGCCGGGCAGAACTCAAAAGAGGCCTCCAGAGGCAGGAGCGGCATCTTTTC
CTATTCAATGATCTGTTTGTTGTGGCCAAAATCAAATATAACAATAACTTTAAGATAAAAAATAAAATTA
AATTAACTGATATGTGGACAGCAAGCTGTGTGGATGAAGTGGGAGAAGGCAACACCAATGCCATGAAATC
CTTTGTTTTGGGCTGGCCCACAGTGAACTTTGTGGCCACTTTCAGTTCTCCAGAACAAAAGGACAAATGG
CTCTCTCTCCTTCAGAGATACATCAATCTAGAGAAAGAAAAGGACTACCCGAAGAGCATTCCCCTCAAAA
TCTTCGCCAAGGACATTGGGAATTGTGCCTACTCTAAAACTATAACAGTAATGAATTCAGATACAGCGAA
TGAAGTTATCAACATGTCATTACCAATGCTAGGGATAACTGGCTCTGAGAGAGATTACCAGTTGTGGGTC
AATTCTGGCAAAGAAGAGGCTCCATACCCACTCATTGGGCATGAATATCCATATGGAATTAAAATGAGCC
ATCTTCGAGACTCTGCACTCCTGACACCGGGATCAAAGGACTCTACCACCCCTTTCAACCTCCAGGAGCC
CTTCCTTATGGAACAGCTCCCCCGAGAGATGCAGTGCCAGTTCATCCTGAAGCCCAGCCGCCTGGCTGCA
GCCCAGCAACTGAGTGATTCAGGTCATAAGACATTTAAAAGGAGAAGATCTATCATAAACTGGGCCTTCT
GGCGAGGTTCTAGCACTCACCTGGACAACTTGCCCTCATCGCCAACATCACCTATGCCAGGACAGCTCTT
TGGAATTTCTCTGCCAAATATTTGTGAGAATGACAATCTGCCCAAACCTGTCTTGGATATGCTTTTCTTT
CTTAATCAAAAAGGACCTCTCACCAAAGGTATCTTCAGGCAATCAGCCAATGTGAAATCCTGCAGAGAAC
TAAAAGAGAAATTGAATTCTGGAGTCGAAGTACACCTAGACTGTGAATCTATTTTTGTGATAGCATCTGT
CTTAAAGGATTTTCTGCGAAATATTCCAGGAAGTATTTTTTCATCAGATCTCTATGATCACTGGGTCTCT
GTAATGGATCAAGGAAATGATGAAGAGAAAATAAATACTGTTCAAAGGCTATTAGACCAGCTTCCGAGAG
CCAATGTTGTTCTCCTAAGGTATCTTTTTGGGGTGTTACACAACATTGAGCAACATTCCTCATCCAATCA
GATGACTGCATTTAATTTAGCTGTGTGTGTCGCTCCAAGTATTCTTTGGCCTCCTGCTTCCTCCAGCCCA
GAACTAGAAAACGAATTTACAAAAAAGGTTTCCCTGCTTATACAATTTCTGATTGAGAATTGCCTTAGGA
TATTTGGAGAAGAAATCACTTCCCTCTTCAGAGAGGTTTCAGTGAGATGTGACACTAGAGAGAATGCCTC
AGATATTTCTTGCTTTCAACTGAATGACTCCTCCTATGACAGCTTGGAAAATGAGCTAAATGAGGATGTT
GATGCACCATGCAGTGACTTGGTAAAGAAACTTGGCCAGGGGAGCAGAAGCATGGACTCTGTCTTAACCC
TCAGTGACTATGATCTTGACCAGCCCGAGGTGGAAGGCCTTTTAACCCTAAGCGACTTTGACTTGGCCCA
TTCTAAAGATGAAGATGTTCAAATGAAACGGCCTCTTGAATCCAAGCCGGTGAACATTTTAGTGTACACA
AAGATCCCACTGCGGGATCATGCCAGGGCCCCATCTGCCATGTGCACACCCAGCTACCTGTCCACAGCTG
CAGCAAATGCTGCAAAAAGCCTGAGGCGACACCGGCGTTGCTCAGAGCCCAGCATCGACTATCTGGATTC
AAAGCTTTCCTACCTCAGGGAGTTTTATCAGAAAAAGCTACGCAAGTCCAGCTGTGATGCAATTCTTTCT
CAAAAAGATGAAGACTATCTGAAGCAGAATCAACCCCTCCAGGAGGAAGGAAAGACATGTTTTAAACAGA
GTTTAGTCACAGGCACTGATGTCAGCAAGAAAAATGCCACTACTCAAAACACTAAGAAGAAAAGCTTGTC
TGGTAGTGAAGGAAATCACGTGAAACTTTTCCCTAAGTCTAAGCCAGTGGCCATTTCTGTGGCATCTTAT
AGTCCTATGTCCTCACAGGATCATTCCAAGAACCAGCCCTTTGATGTGAATACATCTGGATACTCCCCAC
CACACACAGCAGATGCCCTCAAGGGTCCAAGGACACATCGGCGCTGCTCAGAGCCCAACATAGAAGACCA
GAACCGCAAGCTGACCTATCTCAGGGGAATTTATTCAAAGAAACAACATAAAACCAGCTGTGAAGCTGGT
CTCTTGCATGGAGAGGAGGATTATCTCAAACGGCATAAGTCTTTGCAAATGGAGGGGCAGAAGCTCATTA
ATCAGAGTTTAGTCATGGGGATTGAGGTGGGCAAGAGTAGTGCCACAAACCAAAACACTGAGAAGGTTTT
ACCCCCAAGATTAAACCTTTGCCCAAGGACCAGCTATTCCAGCTTATCCTCCCCAGGCACTTCCCCATCC
GGCTCATCAGTAAGCTCCCAAGACAGTGCTTTTTCTCAGATTTCTGAACACTCTGTGTTTACACCCACTG
AGACTTCCTCTCCAATAGATTGCACTTTTCAGGCTCAGAGAAAACGGGAAGACCTTTCTCCTGACTTTAG
CAATGCCAGCCATGTTTCCGGAATGCCCGGTCCCTCATCAGGGCAGGCTTGCAGCCGCCCAGCCTATACA
AAGAAGGACACCATGGAGTGGCATTCACAAATGCATTCTGTAACTCTTCATCCCAGCACATGGTTGAGAA
ATGGTGTGGCCAGTTTGAAAAACTGGTCCCTCAAAAAGAAAGCAAAGGCAGCCAGACCAGAGGAAGAGAA
AATAGCTTCTCCAAAAGGACCCTTAGAGCCACCCCCACATGCTTCTGGTGTTCCAGAAGCCAACTCACTG
CAAGAGGAACAAAAAGACTTGCCCTTAAGGGCAGCTGAAGGACTGTCCCCTGTGCAGTCAGCCCAAAGGT
GTAGTTCTTCTCCCTTCCAGGACTCAGAGAGACACTGTAGCTCTCCATTCAGCCTGGTGGAGAGCAGACT
TAAGCTGTGCATGAAGTCACATGAGGAAATAGAGCCTGGTAGTCAGAGCTCTTCTGGTTCTCTGCCTTGG
GAAAGAGCCTCAGCCAGCTCTTGGACTCTAGAGGATGCGACCAGCCCAGACTCAGGGCCTACAGTGGTCT
GCGACATTGAGGACAGGTATTTAACCAAAGACATTTAA

Translation (1155 aa):
MKTLAERRRSAPSLILDKALQKRPTTRDSPSASVDTCTFLSSLVCSNRTLLIDGRAELKRGLQRQERHLF
LFNDLFVVAKIKYNNNFKIKNKIKLTDMWTASCVDEVGEGNTNAMKSFVLGWPTVNFVATFSSPEQKDKW
LSLLQRYINLEKEKDYPKSIPLKIFAKDIGNCAYSKTITVMNSDTANEVINMSLPMLGITGSERDYQLWV
NSGKEEAPYPLIGHEYPYGIKMSHLRDSALLTPGSKDSTTPFNLQEPFLMEQLPREMQCQFILKPSRLAA
AQQLSDSGHKTFKRRRSIINWAFWRGSSTHLDNLPSSPTSPMPGQLFGISLPNICENDNLPKPVLDMLFF
LNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVS
VMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSP
ELENEFTKKVSLLIQFLIENCLRIFGEEITSLFREVSVRCDTRENASDISCFQLNDSSYDSLENELNEDV
DAPCSDLVKKLGQGSRSMDSVLTLSDYDLDQPEVEGLLTLSDFDLAHSKDEDVQMKRPLESKPVNILVYT
KIPLRDHARAPSAMCTPSYLSTAAANAAKSLRRHRRCSEPSIDYLDSKLSYLREFYQKKLRKSSCDAILS
QKDEDYLKQNQPLQEEGKTCFKQSLVTGTDVSKKNATTQNTKKKSLSGSEGNHVKLFPKSKPVAISVASY
SPMSSQDHSKNQPFDVNTSGYSPPHTADALKGPRTHRRCSEPNIEDQNRKLTYLRGIYSKKQHKTSCEAG
LLHGEEDYLKRHKSLQMEGQKLINQSLVMGIEVGKSSATNQNTEKVLPPRLNLCPRTSYSSLSSPGTSPS
GSSVSSQDSAFSQISEHSVFTPTETSSPIDCTFQAQRKREDLSPDFSNASHVSGMPGPSSGQACSRPAYT
KKDTMEWHSQMHSVTLHPSTWLRNGVASLKNWSLKKKAKAARPEEEKIASPKGPLEPPPHASGVPEANSL
QEEQKDLPLRAAEGLSPVQSAQRCSSSPFQDSERHCSSPFSLVESRLKLCMKSHEEIEPGSQSSSGSLPW
ERASASSWTLEDATSPDSGPTVVCDIEDRYLTKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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