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Report for CCDS58127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58127.1 Public Homo sapiens 11 CCDC179 24 110 108 CCDS HistoryNCBI Gene:100500938Re-query CCDS DB by CCDS ID:58127.1Re-query CCDS DB by GeneID:100500938See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000532798.3 ENSP00000457511.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000532798.3Link to Ensembl Protein Viewer:ENSP00000457511.1Re-query CCDS DB by Nucleotide ID:ENST00000532798Re-query CCDS DB by Protein ID:ENSP00000457511
Original member Current member NCBI NM_001195637.2 NP_001182566.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195637.2Link to Protein Sequence:NP_001182566.1Re-query CCDS DB by Nucleotide ID:NM_001195637Re-query CCDS DB by Protein ID:NP_001182566Link to BLAST:NP_001182566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182566.1 68 H3BU77 68 100% 0 0

Chromosomal Locations for CCDS 58127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 22847510 22847521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22857922 22858026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22859452 22859496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22860377 22860421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (207 nt):
ATGTGCCTGTATTGCTGGGACATCGAGCCTTCCCAAGTCAACCCTGAAGGACCAAGACAACATCATCCTT
CAGAGGTCACTGAGCGGCAGCTTGCAAATAAACGTATTCAGAATATGCAACACCTAAAGAAAGAGAAGAG
GAGACTGAATAAAAGGTTTTCAAGGCCTTCTCCTATTCCAGAACCAGGACTCCTATGGTCATCTTGA

Translation (68 aa):
MCLYCWDIEPSQVNPEGPRQHHPSEVTERQLANKRIQNMQHLKKEKRRLNKRFSRPSPIPEPGLLWSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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