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Report for CCDS5757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5757.1 Public Homo sapiens 7 TMEM168 24 110 108 CCDS HistoryNCBI Gene:64418Re-query CCDS DB by CCDS ID:5757.1Re-query CCDS DB by GeneID:64418See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5757.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312814.11 ENSP00000323068.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312814.11Link to Ensembl Protein Viewer:ENSP00000323068.4Re-query CCDS DB by Nucleotide ID:ENST00000312814Re-query CCDS DB by Protein ID:ENSP00000323068
Original member Current member EBI ENST00000454074.5 ENSP00000390696.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454074.5Link to Ensembl Protein Viewer:ENSP00000390696.1Re-query CCDS DB by Nucleotide ID:ENST00000454074Re-query CCDS DB by Protein ID:ENSP00000390696
Original member Current member NCBI NM_001287497.2 NP_001274426.1 Accepted alive Link to Nucleotide Sequence:NM_001287497.2Link to Protein Sequence:NP_001274426.1Re-query CCDS DB by Nucleotide ID:NM_001287497Re-query CCDS DB by Protein ID:NP_001274426Link to BLAST:NP_001274426.1
Original member Current member NCBI NM_022484.6 NP_071929.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022484.6Link to Protein Sequence:NP_071929.3Re-query CCDS DB by Nucleotide ID:NM_022484Re-query CCDS DB by Protein ID:NP_071929Link to BLAST:NP_071929.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274426.1 697 Q9H0V1-1 697 100% 0 0
NP_071929.3 697 Q9H0V1-1 697 100% 0 0

Chromosomal Locations for CCDS 5757.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112767197 112767744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112772781 112773055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112775176 112775318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112783698 112784825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGTGTAAATCACTGCGTTATTGCTTTAGTCATTGTCTCTATTTAGCAATGACAAGACTGGAAGAAGTAA
ATAGAGAAGTGAACATGCATTCTTCAGTGCGGTATCTTGGCTATTTAGCCAGAATCAATTTATTGGTTGC
TATATGCTTAGGTCTATACGTAAGATGGGAAAAAACAGCAAATTCCTTAATTTTGGTAATTTTTATTCTT
GGTCTTTTTGTTCTTGGAATCGCCAGCATACTCTATTACTATTTTTCAATGGAAGCAGCAAGTTTAAGTC
TCTCCAATCTTTGGTTTGGATTCTTGCTTGGCCTCCTATGTTTTCTTGATAATTCATCCTTTAAAAATGA
TGTAAAAGAAGAATCAACCAAATATTTGCTTCTAACATCCATAGTGTTAAGGATATTGTGCTCTCTGGTG
GAGAGAATTTCTGGTTATGTCCGTCATCGGCCCACTTTACTAACCACAGTTGAATTTCTGGAGCTTGTTG
GATTTGCCATTGCCAGCACAACTATGTTGGTGGAGAAGTCTCTGAGTGTCATTTTGCTTGTTGTAGCTCT
GGCTATGCTGATTATTGATCTGAGAATGAAATCTTTCTTAGCTATTCCAAACTTAGTTATTTTTGCAGTT
TTGTTATTTTTTTCCTCATTGGAAACTCCCAAAAATCCGATTGCTTTTGCGTGTTTTTTTATTTGCCTGA
TAACTGATCCTTTCCTTGACATTTATTTTAGTGGACTTTCAGTAACTGAAAGATGGAAACCCTTTTTGTA
CCGTGGAAGAATTTGCAGAAGACTTTCAGTCGTTTTTGCTGGAATGATTGAGCTTACATTTTTTATTCTT
TCCGCATTCAAACTTAGAGACACTCACCTCTGGTATTTTGTAATACCTGGCTTTTCCATTTTTGGAATTT
TCTGGATGATTTGTCATATTATTTTTCTTTTAACTCTTTGGGGATTCCATACCAAATTAAATGACTGCCA
TAAAGTATATTTTACTCACAGGACAGATTACAATAGCCTTGATAGAATCATGGCATCCAAAGGGATGCGC
CATTTTTGCTTGATTTCAGAGCAGTTGGTGTTCTTTAGTCTTCTTGCAACAGCGATTTTGGGAGCAGTTT
CCTGGCAGCCAACAAATGGAATTTTCTTGAGCATGTTTCTAATCGTTTTGCCATTGGAATCCATGGCTCA
TGGGCTCTTCCATGAATTGGGTAACTGTTTAGGAGGAACATCTGTTGGATATGCTATTGTGATTCCCACC
AACTTCTGCAGTCCTGATGGTCAGCCAACACTGCTTCCCCCAGAACATGTACAGGAGTTAAATTTGAGGT
CTACTGGCATGCTCAATGCTATCCAAAGATTTTTTGCATATCATATGATTGAGACCTATGGATGTGACTA
TTCCACAAGTGGACTGTCATTTGATACTCTGCATTCCAAACTAAAAGCTTTCCTCGAACTTCGGACAGTG
GATGGACCCAGACATGATACGTATATTTTGTATTACAGTGGGCACACCCATGGTACAGGAGAGTGGGCTC
TAGCAGGTGGAGATACACTACGCCTTGACACACTTATAGAATGGTGGAGAGAAAAGAATGGTTCCTTTTG
TTCCCGGCTTATTATCGTATTAGACAGCGAAAATTCAACCCCTTGGGTGAAAGAAGTGAGGAAAATTAAT
GACCAGTATATTGCAGTGCAAGGAGCAGAGTTGATAAAAACAGTAGATATTGAAGAAGCTGACCCGCCAC
AGCTAGGTGACTTTACAAAAGACTGGGTAGAATATAACTGCAACTCCAGTAATAACATCTGCTGGACTGA
AAAGGGACGCACAGTGAAAGCAGTATATGGTGTGTCAAAACGGTGGAGTGACTACACTCTGCATTTGCCA
ACGGGAAGCGATGTGGCCAAGCACTGGATGTTACACTTTCCTCGTATTACATATCCCCTAGTGCATTTGG
CAAATTGGTTATGCGGTCTGAACCTTTTTTGGATCTGCAAAACTTGTTTTAGGTGCTTGAAAAGATTAAA
AATGAGTTGGTTTCTTCCTACTGTGCTGGACACAGGACAAGGCTTCAAACTTGTCAAATCTTAA

Translation (697 aa):
MCKSLRYCFSHCLYLAMTRLEEVNREVNMHSSVRYLGYLARINLLVAICLGLYVRWEKTANSLILVIFIL
GLFVLGIASILYYYFSMEAASLSLSNLWFGFLLGLLCFLDNSSFKNDVKEESTKYLLLTSIVLRILCSLV
ERISGYVRHRPTLLTTVEFLELVGFAIASTTMLVEKSLSVILLVVALAMLIIDLRMKSFLAIPNLVIFAV
LLFFSSLETPKNPIAFACFFICLITDPFLDIYFSGLSVTERWKPFLYRGRICRRLSVVFAGMIELTFFIL
SAFKLRDTHLWYFVIPGFSIFGIFWMICHIIFLLTLWGFHTKLNDCHKVYFTHRTDYNSLDRIMASKGMR
HFCLISEQLVFFSLLATAILGAVSWQPTNGIFLSMFLIVLPLESMAHGLFHELGNCLGGTSVGYAIVIPT
NFCSPDGQPTLLPPEHVQELNLRSTGMLNAIQRFFAYHMIETYGCDYSTSGLSFDTLHSKLKAFLELRTV
DGPRHDTYILYYSGHTHGTGEWALAGGDTLRLDTLIEWWREKNGSFCSRLIIVLDSENSTPWVKEVRKIN
DQYIAVQGAELIKTVDIEEADPPQLGDFTKDWVEYNCNSSNNICWTEKGRTVKAVYGVSKRWSDYTLHLP
TGSDVAKHWMLHFPRITYPLVHLANWLCGLNLFWICKTCFRCLKRLKMSWFLPTVLDTGQGFKLVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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