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Report for CCDS57303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57303.1 Public Mus musculus 4 Rcc1 23 108 98 CCDS HistoryNCBI Gene:100088Re-query CCDS DB by CCDS ID:57303.1Re-query CCDS DB by GeneID:100088See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030726.12 ENSMUSP00000030726.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030726.12Link to Ensembl Protein Viewer:ENSMUSP00000030726.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030726Re-query CCDS DB by Protein ID:ENSMUSP00000030726
Original member Current member NCBI NM_001197082.1 NP_001184011.1 Accepted alive Link to Nucleotide Sequence:NM_001197082.1Link to Protein Sequence:NP_001184011.1Re-query CCDS DB by Nucleotide ID:NM_001197082Re-query CCDS DB by Protein ID:NP_001184011Link to BLAST:NP_001184011.1

Chromosomal Locations for CCDS 57303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132332827 132333002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132334107 132334259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132334485 132334604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132334745 132334900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132335419 132335541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132335717 132335813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132337731 132337910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132338051 132338238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132339203 132339241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132339925 132339997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGCCACCCAAGCGCATAGCTAAGAGAAGGTCACCCCCAGAAGATGCCATCCCCAAAAGCAAGAAGGTGA
AA
GACACTCGTAATCGCGGTCCTGCTACTCGCTCGTGCCAAGTCTCACACAGGTCCCACAACACAGAACC
A
GGCTTGGTGCTGACACTGGGCCAGGGCGACGTGGGCCAGCTGGGGCTGGGTGAAAGTGTGCTGGAGAGG
AAG
AAGCCGGCCTTGGTGCCCCTTCTGCAGGATGTTGTGCAGGCTGAGGCCGGGGGCATGCATACTGTGT
GT
CTGAGCCAAAGTGGCCAGGTCTACTCCTTTGGCTGCAATGACGAGGGTGCCCTGGGAAGGGACACTTC
A
GTCGAAGGCTCAGAAATGGTCCCTGGGAAAGTGGAACTGCAAGAGAAAGTGGTGCAAGTGTCAGCGGGG
GAC
AGTCACACAGCAGCCCTCACCGAAGACGGCCGTGTCTTCCTTTGGGGCTCTTTCCGGGACAATAATG
GT
GTGATCGGGTTGTTGGAGCCCATGAAGAAGAGCATGGTACCTGTTCAAGTGCAGCTGGATGCGCCCGT
G
GTAAAGGTGGCCTCGGGGAACGACCACTTGGTGATGCTCACGAACGATGGCGACCTCTACACCTTGGGT
TGT
GGGGAGCAAGGTCAGCTGGGCCGTGTACCTGAATTATTTGCCAACCGAGGTGGCCGTCAGGGCCTTG
GG
CGACTCCTGGTCCCCAGATGTGTGCTGCTGAAATCCAGGGGGACCCGGGGCCGTGTGCGGTTCCAGGA
T
GCCTTCTGTGGCGCCTATTTCACTTTTGCCATCTCCCGAGAGGGCCACGTGTATGGCTTTGGCCTCTCC
AAC
TATCACCAGCTCGGGACTCCAGGCACTGGATCTTGCTTCATTCCTCAAAACTTGACATCCTTCAAGA
AT
TCCACCAAGTCCTGGGTAGGCTTCTCCGGTGGCCAGCATCACACAGTCTGCATGGATTCGGAAGGGAA
G
GCGTACAGCCTGGGCCGGGCTGAGTACGGGCGCCTGGGCCTTGGGGAGGGTGCTGAGGAGAAGAGCATA
CCC
ACCCTCATTTCCCGGCTGCCCGTGGTCTCCTCAGTGGCCTGTGGGGCTTCTGTGGGTTATGCTGTGT
CC
AAGGATGGTCGTGTTTTTGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACCGGGCAGGATGAAGA
T
GCCTGGAGTCCTGTGGAAATGACTGGCAAACAGCTGGAGAACCGTGTGGTGTTAACTGTGTCCAGTGGG
GGC
CAGCACACGGTCTTACTAGTTAAGGACCAGGCACAGAGCTGA


Translation (434 aa):
MPPKRIAKRRSPPEDAIPKSKKVKDTRNRGPATRSCQVSHRSHNTEPGLVLTLGQGDVGQLGLGESVLER
K
KPALVPLLQDVVQAEAGGMHTVCLSQSGQ
VYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG
D
SHTAALTEDGRVFLWGSFR
DNNGVIGLLEPMKKSMVPVQVQLDAPVVKVASGNDHLVMLTNDGDLYTLG
C
GEQGQLGRVPELFANRGGRQGL
GRLLVPRCVLLKSRGTRGRVRFQDAFCGAYFTFAISREGHVYGFGLS
N
YHQL
GTPGTGSCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSI
P
TLISRLPVVSSVACGASVGYAVSKD
GRVFAWGMGTNYQLGTGQDEDAWSPVEMTGKQLENRVVLTVSSG
G
QHTVLLVKDQAQS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser